Naturally occurring modified ribonucleosides

PJ McCown, A Ruszkowska, CN Kunkler… - Wiley …, 2020 - Wiley Online Library
The chemical identity of RNA molecules beyond the four standard ribonucleosides has
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …

The last universal common ancestor between ancient Earth chemistry and the onset of genetics

MC Weiss, M Preiner, JC Xavier, V Zimorski… - PLoS …, 2018 - journals.plos.org
All known life forms trace back to a last universal common ancestor (LUCA) that witnessed
the onset of Darwinian evolution. One can ask questions about LUCA in various ways, the …

In-cell architecture of an actively transcribing-translating expressome

FJ O'Reilly, L Xue, A Graziadei, L Sinn, S Lenz… - Science, 2020 - science.org
Structural biology studies performed inside cells can capture molecular machines in action
within their native context. In this work, we developed an integrative in-cell structural …

Optimization of codon translation rates via tRNA modifications maintains proteome integrity

DD Nedialkova, SA Leidel - Cell, 2015 - cell.com
Proteins begin to fold as they emerge from translating ribosomes. The kinetics of ribosome
transit along a given mRNA can influence nascent chain folding, but the extent to which …

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity

E Bosi, JM Monk, RK Aziz, M Fondi… - Proceedings of the …, 2016 - National Acad Sciences
Staphylococcus aureus is a preeminent bacterial pathogen capable of colonizing diverse
ecological niches within its human host. We describe here the pangenome of S. aureus …

An integrated, structure-and energy-based view of the genetic code

H Grosjean, E Westhof - Nucleic acids research, 2016 - academic.oup.com
The principles of mRNA decoding are conserved among all extant life forms. We present an
integrative view of all the interaction networks between mRNA, tRNA and rRNA: the intrinsic …

High-resolution structure of the Escherichia coli ribosome

J Noeske, MR Wasserman, DS Terry… - Nature structural & …, 2015 - nature.com
Protein synthesis by the ribosome is highly dependent on the ionic conditions in the cellular
environment, but the roles of ribosome solvation have remained poorly understood …

Functions of bacterial tRNA modifications: from ubiquity to diversity

V de Crécy-Lagard, M Jaroch - Trends in Microbiology, 2021 - cell.com
Modified nucleotides in tRNA are critical components of the translation apparatus, but their
importance in the process of translational regulation had until recently been greatly …

Locating macromolecular assemblies in cells by 2D template matching with cisTEM

BA Lucas, BA Himes, L Xue, T Grant, J Mahamid… - Elife, 2021 - elifesciences.org
For a more complete understanding of molecular mechanisms, it is important to study
macromolecules and their assemblies in the broader context of the cell. This context can be …

Distribution and frequencies of post-transcriptional modifications in tRNAs

MA Machnicka, A Olchowik, H Grosjean, JM Bujnicki - RNA biology, 2014 - Taylor & Francis
Functional tRNA molecules always contain a wide variety of post-transcriptionally modified
nucleosides. These modifications stabilize tRNA structure, allow for proper interaction with …