Current status and advances in quantitative proteomic mass spectrometry

VC Wasinger, M Zeng, Y Yau - International journal of …, 2013 - Wiley Online Library
The accurate quantitation of proteins and peptides in complex biological systems is one of
the most challenging areas of proteomics. Mass spectrometry‐based approaches have …

Multi-dimensional liquid chromatography in proteomics—a review

X Zhang, A Fang, CP Riley, M Wang, FE Regnier… - Analytica chimica …, 2010 - Elsevier
Proteomics is the large-scale study of proteins, particularly their expression, structures and
functions. This still-emerging combination of technologies aims to describe and characterize …

The HDL proteome in acute coronary syndromes shifts to an inflammatory profile

K Alwaili, D Bailey, Z Awan, SD Bailey, I Ruel… - … et Biophysica Acta (BBA …, 2012 - Elsevier
Inflammation is a major factor underlying acute coronary syndromes (ACS). HDL particles
may be remodeled, becoming functionally defective, under the inflammatory conditions seen …

Heparin-enriched plasma proteome is significantly altered in Alzheimer's Disease

Q Guo, L Ping, EB Dammer, DM Duong, L Yin… - Molecular …, 2024 - Springer
Heparin binding proteins (HBPs) with roles in extracellular matrix assembly are strongly
correlated to β-amyloid (Aβ) and tau pathology in Alzheimer's disease (AD) brain and …

Label-based and label-free strategies for protein quantitation

S Anand, M Samuel, CS Ang, S Keerthikumar… - Proteome …, 2017 - Springer
The precise quantification of changes between various physiological states in a biological
system is highly complex in nature. Over the past few years, in combination with classical …

Targeted mass spectrometry to quantify brain-derived cerebrospinal fluid biomarkers in Alzheimer's disease

M Zhou, RU Haque, EB Dammer, DM Duong, L Ping… - Clinical proteomics, 2020 - Springer
Introduction Alzheimer's disease (AD) is the most common cause of dementia, characterized
by progressive cognitive decline. Protein biomarkers of AD brain pathology, including β …

[PDF][PDF] Serum proteomics and biomarker discovery across the spectrum of nonalcoholic fatty liver disease

LN Bell, JL Theodorakis, R Vuppalanchi… - …, 2010 - Wiley Online Library
Nonalcoholic fatty liver disease (NAFLD), ranging from relatively benign simple steatosis to
progressive nonalcoholic steatohepatitis (NASH) and fibrosis, is an increasingly common …

Comparative evaluation of label‐free SINQ normalized spectral index quantitation in the central proteomics facilities pipeline

DC Trudgian, G Ridlova, R Fischer, MM Mackeen… - …, 2011 - Wiley Online Library
Normalized spectral index quantification was recently presented as an accurate method of
label‐free quantitation, which improved spectral counting by incorporating the intensities of …

Proteomic analysis of blastema formation in regenerating axolotl limbs

N Rao, D Jhamb, DJ Milner, B Li, F Song, M Wang… - BMC biology, 2009 - Springer
Background Following amputation, urodele salamander limbs reprogram somatic cells to
form a blastema that self-organizes into the missing limb parts to restore the structure and …

Estimating relative abundances of proteins from shotgun proteomics data

S McIlwain, M Mathews, MS Bereman, EW Rubel… - BMC …, 2012 - Springer
Background Spectral counting methods provide an easy means of identifying proteins with
differing abundances between complex mixtures using shotgun proteomics data. The crux …