Chemosensory signal transduction in Caenorhabditis elegans

DM Ferkey, P Sengupta, ND L'Etoile - Genetics, 2021 - academic.oup.com
Chemosensory neurons translate perception of external chemical cues, including odorants,
tastants, and pheromones, into information that drives attraction or avoidance motor …

[HTML][HTML] Fold-change detection in biological systems

M Adler, U Alon - Current Opinion in Systems Biology, 2018 - Elsevier
Many sensory systems in cells and organisms share a recurring property called fold-change
detection (FCD). FCD describes a system whose dynamics–including amplitude and …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

A convolutional neural network segments yeast microscopy images with high accuracy

N Dietler, M Minder, V Gligorovski… - Nature …, 2020 - nature.com
The identification of cell borders ('segmentation') in microscopy images constitutes a
bottleneck for large-scale experiments. For the model organism Saccharomyces cerevisiae …

Multidimensional characterization of inducible promoters and a highly light-sensitive LOV-transcription factor

V Gligorovski, A Sadeghi, SJ Rahi - Nature Communications, 2023 - nature.com
The ability to independently control the expression of different genes is important for
quantitative biology. Using budding yeast, we characterize GAL1pr, GALL, MET3pr, CUP1pr …

Information propagation in multilayer systems with higher-order interactions across timescales

G Nicoletti, DM Busiello - Physical Review X, 2024 - APS
Complex systems are characterized by multiple spatial and temporal scales. A natural
framework to capture their multiscale nature is that of multilayer networks, where different …

[PDF][PDF] Rheostatic control of ABA signaling through HOS15-mediated OST1 degradation

A Ali, JK Kim, M Jan, HA Khan, IU Khan, M Shen… - Molecular Plant, 2019 - cell.com
Dehydrating stresses trigger the accumulation of abscisic acid (ABA), a key plant stress-
signaling hormone that activates Snf1-Related Kinases (SnRK2s) to mount adaptive …

Rate thresholds in cell signaling have functional and phenotypic consequences in non-linear time-dependent environments

A Thiemicke, G Neuert - Frontiers in cell and developmental biology, 2023 - frontiersin.org
All cells employ signal transduction pathways to respond to physiologically relevant
extracellular cytokines, stressors, nutrient levels, hormones, morphogens, and other stimuli …

Automatic synchronisation of the cell cycle in budding yeast through closed-loop feedback control

G Perrino, S Napolitano, F Galdi, A La Regina… - Nature …, 2021 - nature.com
The cell cycle is the process by which eukaryotic cells replicate. Yeast cells cycle
asynchronously with each cell in the population budding at a different time. Although there …

Processing temporal growth factor patterns by an epidermal growth factor receptor network dynamically established in space

A Koseska, PIH Bastiaens - Annual Review of Cell and …, 2020 - annualreviews.org
The proto-oncogenic epidermal growth factor (EGF) receptor (EGFR) is a tyrosine kinase
whose sensitivity and response to growth factor signals that vary over time and space …