Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning

S Orozco-Arias, G Isaza, R Guyot - International journal of molecular …, 2019 - mdpi.com
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …

Gene and Transposable Element Expression Evolution Following Recent and Past Polyploidy Events in Spartina (Poaceae)

D Giraud, O Lima, M Rousseau-Gueutin… - Frontiers in …, 2021 - frontiersin.org
Gene expression dynamics is a key component of polyploid evolution, varying in nature,
intensity, and temporal scales, most particularly in allopolyploids, where two or more sub …

Phylogenomics and plastome evolution of the chloridoid grasses (Chloridoideae: Poaceae)

MR Duvall, AE Fisher, JT Columbus… - … Journal of Plant …, 2016 - journals.uchicago.edu
Premise of research. Studies of complete plastomes have proven informative for our
understanding of the molecular evolution and phylogenomics of grasses, but subfamily …

Diversity and Ecological Characterization of Sporulating Higher Filamentous Marine Fungi Associated with Spartina maritima (Curtis) Fernald in Two Portuguese Salt …

ML Calado, L Carvalho, KL Pang, M Barata - Microbial ecology, 2015 - Springer
Fungal communities associated with early stages of decomposition of Spartina maritima
(Curtis) Fernald were assessed in two geographically distinct salt marshes in Portugal by …

Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae)

A Cavé-Radet, D Giraud, O Lima, A El Amrani… - Plant molecular …, 2020 - Springer
Abstract Key Message Differential expression of mi-RNAs targeting developmental
processes and progressive downregulation of repeat-associated siRNAs following genome …

Polyploid speciation and genome evolution: lessons from recent allopolyploids

ML Ainouche, JF Wendel - … evolution, speciation, coevolution and origin of …, 2014 - Springer
Whole genome duplication (polyploidy) represents a primary mechanism of sympatric
speciation, especially in plants where it is particularly prevalent. In this chapter, we focus on …

Spartina versicolor Fabre: Another case of Spartina trans-Atlantic introduction?

A Baumel, M Rousseau-Gueutin… - Biological …, 2016 - Springer
Intercontinental introductions are widespread in the genus Spartina, with important
ecological and evolutionary consequences. The native or introduced status of Spartina …

Evolutionary dynamics of transposable elements and satellite DNAs in polyploid Spartina species

D Giraud, O Lima, V Huteau, O Coriton, J Boutte… - Plant Science, 2021 - Elsevier
Repeated sequences and polyploidy play a central role in plant genome dynamics. Here,
we analyze the evolutionary dynamics of repeats in tetraploid and hexaploid Spartina …

A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

Z Si, B Du, J Huo, S He, Q Liu, H Zhai - BMC genomics, 2016 - Springer
Abstract Background Sweetpotato, Ipomoea batatas (L.) Lam., is an important food crop
widely grown in the world. However, little is known about the genome of this species …

Next-generation sequencing and the challenge of deciphering evolution of recent and highly polyploid genomes

A Salmon, ML Aïnouche - 2015 - agris.fao.org
Next-generation sequencing and the challenge of deciphering evolution of recent and highly
polyploid genomes Food and Agriculture Organization of the United Nations Discover About …