Auxiliary metabolic gene functions in pelagic and benthic viruses of the Baltic Sea
Marine microbial communities are facing various ecosystem fluctuations (eg, temperature,
organic matter concentration, salinity, or redox regimes) and thus have to be highly adaptive …
organic matter concentration, salinity, or redox regimes) and thus have to be highly adaptive …
Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes
The genome encodes the metabolic and functional capabilities of an organism and should
be a major determinant of its ecological niche. Yet, it is unknown if the niche can be …
be a major determinant of its ecological niche. Yet, it is unknown if the niche can be …
Labile dissolved organic matter compound characteristics select for divergence in marine bacterial activity and transcription
Bacteria play a key role in the planetary carbon cycle partly because they rapidly assimilate
labile dissolved organic matter (DOM) in the ocean. However, knowledge of the molecular …
labile dissolved organic matter (DOM) in the ocean. However, knowledge of the molecular …
Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper
The planktonic realm from bacteria to zooplankton provides the baseline for pelagic aquatic
food webs. However, multiple trophic levels are seldomly included in time series studies …
food webs. However, multiple trophic levels are seldomly included in time series studies …
Evaluating metagenomic assembly approaches for biome-specific gene catalogues
LF Delgado, AF Andersson - Microbiome, 2022 - Springer
Background For many environments, biome-specific microbial gene catalogues are being
recovered using shotgun metagenomics followed by assembly and gene calling on the …
recovered using shotgun metagenomics followed by assembly and gene calling on the …
Environmental changes affect the microbial release of hydrogen sulfide and methane from sediments at Boknis Eck (SW Baltic Sea)
Anthropogenic activities are modifying the oceanic environment rapidly and are causing
ocean warming and deoxygenation, affecting biodiversity, productivity, and biogeochemical …
ocean warming and deoxygenation, affecting biodiversity, productivity, and biogeochemical …
Seasonal succession and coherence among bacteria and microeukaryotes in Lake Baikal
IS Mikhailov, YP Galachyants, YS Bukin, DP Petrova… - Microbial ecology, 2022 - Springer
Microorganisms exhibit seasonal succession governed by physicochemical factors and
interspecies interactions, yet drivers of this process in different environments remain to be …
interspecies interactions, yet drivers of this process in different environments remain to be …
Stochasticity-driven weekly fluctuations distinguished the temporal pattern of particle-associated microorganisms from its free-living counterparts in temperate coastal …
Microbial community dynamics directly determine their ecosystem functioning. Despite the
well-known annual recurrence pattern, little is known how different lifestyles affect the …
well-known annual recurrence pattern, little is known how different lifestyles affect the …
Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341
E Nilsson, K Li, J Fridlund, S Šulčius… - Applied and …, 2019 - Am Soc Microbiol
Knowledge in aquatic virology has been greatly improved by culture-independent methods,
yet there is still a critical need for isolating novel phages to identify the large proportion of …
yet there is still a critical need for isolating novel phages to identify the large proportion of …
Coastal upwelling systems as dynamic mosaics of bacterioplankton functional specialization
Coastal upwelling areas are extraordinarily productive environments where prokaryotic
communities, the principal remineralizers of dissolved organic matter (DOM), rapidly …
communities, the principal remineralizers of dissolved organic matter (DOM), rapidly …