Plant virus metagenomics: advances in virus discovery

MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …

Methods in virus diagnostics: from ELISA to next generation sequencing

N Boonham, J Kreuze, S Winter, R van der Vlugt… - Virus research, 2014 - Elsevier
Despite the seemingly continuous development of newer and ever more elaborate methods
for detecting and identifying viruses, very few of these new methods get adopted for routine …

Historical perspective, development and applications of next-generation sequencing in plant virology

M Barba, H Czosnek, A Hadidi - Viruses, 2014 - mdpi.com
Next-generation high throughput sequencing technologies became available at the onset of
the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing …

VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs

Y Zheng, S Gao, C Padmanabhan, R Li, M Galvez… - Virology, 2017 - Elsevier
Accurate detection of viruses in plants and animals is critical for agriculture production and
human health. Deep sequencing and assembly of virus-derived small interfering RNAs has …

Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms

Q Wu, SW Ding, Y Zhang, S Zhu - Annual review of …, 2015 - annualreviews.org
A fast, accurate, and full indexing of viruses and viroids in a sample for the inspection and
quarantine services and disease management is desirable but was unrealistic until recently …

Current impact and future directions of high throughput sequencing in plant virus diagnostics

S Massart, A Olmos, H Jijakli, T Candresse - Virus research, 2014 - Elsevier
The ability to provide a fast, inexpensive and reliable diagnostic for any given viral infection
is a key parameter in efforts to fight and control these ubiquitous pathogens. The recent …

[PDF][PDF] 2019 新型冠状病毒基因组的生物信息学分析

陈嘉源, 施劲松, 丘栋安, 刘畅, 李鑫, 赵强, 阮吉寿… - 生物信息学, 2020 - researchgate.net
2019 年12 月, 中国武汉报道了冠状病毒引起的肺炎, 其临床症状与2003 年爆发的严重急性呼吸
综合征(Severe Acute Respiratory Syndrome, SARS) 不同, 因此推断该病毒可能是冠状病毒的 …

Potato virus Y: a major crop pathogen that has provided major insights into the evolution of viral pathogenicity

J Quenouille, N Vassilakos… - Molecular plant …, 2013 - Wiley Online Library
Taxonomy P otato virus Y (PVY) is the type member of the genus P otyvirus in the family P
otyviridae. Virion and genome properties PVY virions have a filamentous, flexuous form, with …

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification

Y Bao, V Chetvernin, T Tatusova - Archives of virology, 2014 - Springer
The number of viral genome sequences in the public databases is increasing dramatically,
and these sequences are playing an important role in virus classification. Pairwise …

Global advances in tomato virome research: current status and the impact of high-throughput sequencing

MPS Rivarez, A Vučurović, N Mehle… - Frontiers in …, 2021 - frontiersin.org
Viruses cause a big fraction of economically important diseases in major crops, including
tomato. In the past decade (2011–2020), many emerging or re-emerging tomato-infecting …