From big data to precision medicine

T Hulsen, SS Jamuar, AR Moody, JH Karnes… - Frontiers in …, 2019 - frontiersin.org
For over a decade the term “Big data” has been used to describe the rapid increase in
volume, variety and velocity of information available, not just in medical research but in …

A review of single-cell RNA-Seq annotation, integration, and cell–cell communication

C Cheng, W Chen, H Jin, X Chen - Cells, 2023 - mdpi.com
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful tool for investigating
cellular biology at an unprecedented resolution, enabling the characterization of cellular …

[HTML][HTML] Second-strand synthesis-based massively parallel scRNA-seq reveals cellular states and molecular features of human inflammatory skin pathologies

TK Hughes, MH Wadsworth, TM Gierahn, T Do… - Immunity, 2020 - cell.com
High-throughput single-cell RNA-sequencing (scRNA-seq) methodologies enable
characterization of complex biological samples by increasing the number of cells that can be …

Proximal colon–derived O-glycosylated mucus encapsulates and modulates the microbiota

K Bergstrom, X Shan, D Casero, A Batushansky… - Science, 2020 - science.org
Colon mucus segregates the intestinal microbiota from host tissues, but how it organizes to
function throughout the colon is unclear. In mice, we found that colon mucus consists of two …

TREM2 macrophages induced by human lipids drive inflammation in acne lesions

TH Do, F Ma, PR Andrade, R Teles… - Science …, 2022 - science.org
Acne affects 1 in 10 people globally, often resulting in disfigurement. The disease involves
excess production of lipids, particularly squalene, increased growth of Cutibacterium acnes …

[HTML][HTML] Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control

HP Gideon, TK Hughes, CN Tzouanas, MH Wadsworth… - Immunity, 2022 - cell.com
Mycobacterium tuberculosis lung infection results in a complex multicellular structure: the
granuloma. In some granulomas, immune activity promotes bacterial clearance, but in …

Organoid-induced differentiation of conventional T cells from human pluripotent stem cells

A Montel-Hagen, CS Seet, S Li, B Chick, Y Zhu… - Cell stem cell, 2019 - cell.com
The ability to generate T cells from pluripotent stem cells (PSCs) has the potential to
transform autologous T cell immunotherapy by facilitating universal, off-the-shelf cell …

Plasma cells are obligate effectors of enhanced myelopoiesis in aging bone marrow

PD Pioli, D Casero, E Montecino-Rodriguez… - Immunity, 2019 - cell.com
Aging results in increased myelopoiesis, which is linked to the increased incidence of
myeloid leukemias and production of myeloid-derived suppressor cells. Here, we examined …

Cell-free DNA methylation and transcriptomic signature prediction of pregnancies with adverse outcomes

G Del Vecchio, Q Li, W Li, S Thamotharan… - Epigenetics, 2021 - Taylor & Francis
Although analysis of maternal plasma cell-free content has been employed for screening of
genetic abnormalities within a pregnancy, limited attention has been paid to its use for the …

Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

I Mandric, J Rotman, HT Yang, N Strauli… - Nature …, 2020 - nature.com
Profiling immunoglobulin (Ig) receptor repertoires with specialized assays can be cost-
ineffective and time-consuming. Here we report ImReP, a computational method for rapid …