Weighted gene co-expression network analysis identifies modules and functionally enriched pathways in the lactation process

M Farhadian, SA Rafat, B Panahi, C Mayack - Scientific Reports, 2021 - nature.com
The exponential growth in knowledge has resulted in a better understanding of the lactation
process in a wide variety of animals. However, the underlying genetic mechanisms are not …

Weighted gene co-expression network analysis of the salt-responsive transcriptomes reveals novel hub genes in green halophytic microalgae Dunaliella salina

B Panahi, MA Hejazi - Scientific Reports, 2021 - nature.com
Despite responses to salinity stress in Dunaliella salina, a unicellular halotolerant green
alga, being subject to extensive study, but the underlying molecular mechanism remains …

Integrative systems biology analysis elucidates mastitis disease underlying functional modules in dairy cattle

N Ghahramani, J Shodja, SA Rafat, B Panahi… - Frontiers in …, 2021 - frontiersin.org
Background: Mastitis is the most prevalent disease in dairy cattle and one of the most
significant bovine pathologies affecting milk production, animal health, and reproduction. In …

Identification of potentially functional modules and diagnostic genes related to amyotrophic lateral sclerosis based on the WGCNA and LASSO algorithms

N Daneshafrooz, M Bagherzadeh Cham, M Majidi… - Scientific Reports, 2022 - nature.com
Amyotrophic lateral sclerosis (ALS) is a genetically and phenotypically heterogeneous
disease results in the loss of motor neurons. Mounting information points to involvement of …

Global transcriptome analysis identifies critical functional modules associated with multiple abiotic stress responses in microalgae Chromochloris zofingiensis

B Panahi - Plos one, 2024 - journals.plos.org
In the current study, systems biology approach was applied to get a deep insight regarding
the regulatory mechanisms of Chromochloris zofingiensis under overall stress conditions …

Navigating the microalgal maze: a comprehensive review of recent advances and future perspectives in biological networks

B Panahi, R Khalilpour Shadbad - Planta, 2024 - Springer
Main conclusion PPI analysis deepens our knowledge in critical processes like carbon
fixation and nutrient sensing. Moreover, signaling networks, including pathways like …

[HTML][HTML] Harnessing systems biology approach for characterization of carotenoid biosynthesis pathways in microalgae

B Panahi, NH Gharajeh, HM Jalaly… - … and Biophysics Reports, 2024 - Elsevier
Abstract Systems biology is an interdisciplinary field that aims to understand complex
biological processes at the system level. The data, driven by high-throughput omics …

Meta-analysis of transcriptomic profiles in Dunaliella tertiolecta reveals molecular pathway responses to different abiotic stresses

B Panahi, M Farhadian, NH Gharajeh… - Functional Plant …, 2024 - CSIRO Publishing
Microalgae, as photosynthetic organisms, are the potential source of sustainable metabolite
production. However, different stress conditions might affect the production of various …

Revealing mechanisms of high protein accumulation in Graesiella emersonii WBG-1 under heterotrophic condition

K Wang, X Wen, Y Ding, Y Geng, Y Yu, W Tian… - Bioresource …, 2025 - Elsevier
Low protein content under heterotrophic conditions limits the industrial production of
proteins by microalgae. In this study, Graesiella emersonii WBG-1 efficiently synthesized …

Integrative Identification of Crucial Genes Associated With Plant Hormone-Mediated Bud Dormancy in Prunus mume

P Li, T Zheng, Z Zhang, W Liu, L Qiu, J Wang… - Frontiers in …, 2021 - frontiersin.org
Prunus mume is an important ornamental woody plant with winter-flowering property, which
is closely related to bud dormancy. Despite recent scientific headway in deciphering the …