[HTML][HTML] Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene …
Background Whole genome sequence (WGS)-based strain typing finds increasing use in the
epidemiologic analysis of bacterial pathogens in both public health as well as more …
epidemiologic analysis of bacterial pathogens in both public health as well as more …
MLST revisited: the gene-by-gene approach to bacterial genomics
MCJ Maiden, MJJ Van Rensburg, JE Bray… - Nature Reviews …, 2013 - nature.com
Multilocus sequence typing (MLST) was proposed in 1998 as a portable sequence-based
method for identifying clonal relationships among bacteria. Today, in the whole-genome era …
method for identifying clonal relationships among bacteria. Today, in the whole-genome era …
[HTML][HTML] Open-access bacterial population genomics: BIGSdb software, the PubMLST. org website and their applications
KA Jolley, JE Bray, MCJ Maiden - Wellcome open research, 2018 - ncbi.nlm.nih.gov
The PubMLST. org website hosts a collection of open-access, curated databases that
integrate population sequence data with provenance and phenotype information for over …
integrate population sequence data with provenance and phenotype information for over …
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
Rapid molecular typing of bacterial pathogens is critical for public health epidemiology,
surveillance and infection control, yet routine use of whole genome sequencing (WGS) for …
surveillance and infection control, yet routine use of whole genome sequencing (WGS) for …
Current and emerging Legionella diagnostics for laboratory and outbreak investigations
JW Mercante, JM Winchell - Clinical microbiology reviews, 2015 - Am Soc Microbiol
Legionnaires' disease (LD) is an often severe and potentially fatal form of bacterial
pneumonia caused by an extensive list of Legionella species. These ubiquitous freshwater …
pneumonia caused by an extensive list of Legionella species. These ubiquitous freshwater …
Core genome multilocus sequence typing scheme for high-resolution typing of Enterococcus faecium
M De Been, M Pinholt, J Top, S Bletz… - Journal of clinical …, 2015 - Am Soc Microbiol
Enterococcus faecium, a common inhabitant of the human gut, has emerged in the last 2
decades as an important multidrug-resistant nosocomial pathogen. Since the start of the …
decades as an important multidrug-resistant nosocomial pathogen. Since the start of the …
Benchmarking of methods for genomic taxonomy
One of the first issues that emerges when a prokaryotic organism of interest is encountered
is the question of what it is—that is, which species it is. The 16S rRNA gene formed the basis …
is the question of what it is—that is, which species it is. The 16S rRNA gene formed the basis …
[图书][B] Practical handbook of microbiology
LH Green, E Goldman - 2021 - books.google.com
Practical Handbook of Microbiology, 4th edition provides basic, clear and concise
knowledge and practical information about working with microorganisms. Useful to anyone …
knowledge and practical information about working with microorganisms. Useful to anyone …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Genomic epidemiology: whole-genome-sequencing–powered surveillance and outbreak investigation of foodborne bacterial pathogens
X Deng, HC den Bakker… - Annual review of food …, 2016 - annualreviews.org
As we are approaching the twentieth anniversary of PulseNet, a network of public health and
regulatory laboratories that has changed the landscape of foodborne illness surveillance …
regulatory laboratories that has changed the landscape of foodborne illness surveillance …