Accurate and efficient constrained molecular dynamics of polymers through Newton's method and special purpose code

L López-Villellas, CCK Mikkelsen, JJ Galano-Frutos… - bioRxiv, 2022 - biorxiv.org
In molecular dynamics simulations we can often increase the time step by imposing
constraints on internal degrees of freedom, such as bond lengths and bond angles. This …

Improving simulation of biological molecules: refining mathematical, physical and computational tools

P García-Risueño - 2011 - digital.csic.es
[EN]: The goal of the research summarized in this Ph. D. dissertation is the improvement of
the computational methods for simulation of molecules, specially biological molecules such …