MODER2: first-order Markov modeling and discovery of monomeric and dimeric binding motifs

J Toivonen, PK Das, J Taipale, E Ukkonen - Bioinformatics, 2020 - academic.oup.com
Motivation Position-specific probability matrices (PPMs, also called position-specific weight
matrices) have been the dominating model for transcription factor (TF)-binding motifs in …