High-throughput genomic data in systematics and phylogenetics
High-throughput genomic sequencing is rapidly changing the field of phylogenetics by
decreasing the cost and increasing the quantity and rate of data collection by several orders …
decreasing the cost and increasing the quantity and rate of data collection by several orders …
The extent of mycorrhizal colonization of roots and its influence on plant growth and phosphorus content
KK Treseder - Plant and Soil, 2013 - Springer
Aims The most common metric of arbuscular mycorrhizal fungal (AMF) abundance is percent
root length colonized (PRLC) by mycorrhizal structures. Frequently, plants with greater …
root length colonized (PRLC) by mycorrhizal structures. Frequently, plants with greater …
Whole-genome analyses resolve early branches in the tree of life of modern birds
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
Phylotranscriptomic analysis of the origin and early diversification of land plants
Reconstructing the origin and evolution of land plants and their algal relatives is a
fundamental problem in plant phylogenetics, and is essential for understanding how critical …
fundamental problem in plant phylogenetics, and is essential for understanding how critical …
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
Inference of multiple sequence alignments (MSAs) is a critical part of phylogenetic and
comparative genomics studies. However, from the same set of sequences different MSAs …
comparative genomics studies. However, from the same set of sequences different MSAs …
Intergenomic Comparisons Highlight Modularity of the Denitrification Pathway and Underpin the Importance of Community Structure for N2O Emissions
Nitrous oxide (N2O) is a potent greenhouse gas and the predominant ozone depleting
substance. The only enzyme known to reduce N2O is the nitrous oxide reductase, encoded …
substance. The only enzyme known to reduce N2O is the nitrous oxide reductase, encoded …
[HTML][HTML] System-wide mapping of peptide-GPCR interactions in C. elegans
I Beets, S Zels, E Vandewyer, J Demeulemeester… - Cell reports, 2023 - cell.com
Neuropeptides and peptide hormones are ancient, widespread signaling molecules that
underpin almost all brain functions. They constitute a broad ligand-receptor network, mainly …
underpin almost all brain functions. They constitute a broad ligand-receptor network, mainly …
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Background The use of transcriptomic and genomic datasets for phylogenetic reconstruction
has become increasingly common as researchers attempt to resolve recalcitrant nodes with …
has become increasingly common as researchers attempt to resolve recalcitrant nodes with …
PASTA: ultra-large multiple sequence alignment
In this paper, we introduce a new and highly scalable algorithm, PASTA, for large-scale
multiple sequence alignment estimation. PASTA uses a new technique to produce an …
multiple sequence alignment estimation. PASTA uses a new technique to produce an …
Recently identified microbial guild mediates soil N2O sink capacity
CM Jones, A Spor, FP Brennan, MC Breuil… - Nature Climate …, 2014 - nature.com
Nitrous oxide (N2O) is the predominant ozone-depleting substance and contributes
approximately 6% to overall global warming,. Terrestrial ecosystems account for nearly 70 …
approximately 6% to overall global warming,. Terrestrial ecosystems account for nearly 70 …