Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation

K Van Roey, B Uyar, RJ Weatheritt, H Dinkel… - Chemical …, 2014 - ACS Publications
The eukaryotic cell is a bustling collection of macromolecules acting cooperatively to
mediate the functions required for cell viability. Specific, context-dependent and tightly …

The alphabet of intrinsic disorder: I. Act like a Pro: On the abundance and roles of proline residues in intrinsically disordered proteins

FX Theillet, L Kalmar, P Tompa, KH Han… - Intrinsically …, 2013 - Taylor & Francis
A significant fraction of every proteome is occupied by biologically active proteins that do not
form unique three-dimensional structures. These intrinsically disordered proteins (IDPs) and …

SH3 domains: modules of protein–protein interactions

N Kurochkina, U Guha - Biophysical reviews, 2013 - Springer
Abstract Src homology 3 (SH3) domains are involved in the regulation of important cellular
pathways, such as cell proliferation, migration and cytoskeletal modifications. Recognition of …

Protein dynamics and allostery: an NMR view

SR Tzeng, CG Kalodimos - Current opinion in structural biology, 2011 - Elsevier
Allostery, the process by which distant sites within a protein system are energetically
coupled, is an efficient and ubiquitous mechanism for activity regulation. A purely …

Dimerization of mammalian kinesin-3 motors results in superprocessive motion

V Soppina, SR Norris, AS Dizaji… - Proceedings of the …, 2014 - National Acad Sciences
The kinesin-3 family is one of the largest among the kinesin superfamily and its members
play important roles in a wide range of cellular transport activities, yet the molecular …

Cis-trans isomerization of peptoid residues in the collagen triple-helix

R Qiu, X Li, K Huang, W Bai, D Zhou, G Li… - Nature …, 2023 - nature.com
Cis-peptide bonds are rare in proteins, and building blocks less favorable to the trans-
conformer have been considered destabilizing. Although proline tolerates the cis-conformer …

Protein conformational switches: from nature to design

JH Ha, SN Loh - Chemistry–A European Journal, 2012 - Wiley Online Library
Protein conformational switches alter their shape upon receiving an input signal, such as
ligand binding, chemical modification, or change in environment. The apparent simplicity of …

Pin1-induced proline isomerization in cytosolic p53 mediates BAX activation and apoptosis

AV Follis, F Llambi, P Merritt, JE Chipuk, DR Green… - Molecular cell, 2015 - cell.com
The cytosolic fraction of the tumor suppressor p53 activates the apoptotic effector protein
BAX to trigger apoptosis. Here we report that p53 activates BAX through a mechanism …

Signaling through dynamic linkers as revealed by PKA

M Akimoto, R Selvaratnam… - Proceedings of the …, 2013 - National Acad Sciences
Protein kinase A (PKA) is a prototype of multidomain signaling proteins functioning as
allosteric conformational switches. Allosteric transitions have been the subject of extensive …

Prolyl isomerization and its catalysis in protein folding and protein function

PAM Schmidpeter, FX Schmid - Journal of molecular biology, 2015 - Elsevier
Prolyl isomerizations are intrinsically slow processes. They determine the rates of many
protein folding reactions and control regulatory events in folded proteins. Prolyl isomerases …