Vibrational spectroscopic map, vibrational spectroscopy, and intermolecular interaction

CR Baiz, B Błasiak, J Bredenbeck, M Cho… - Chemical …, 2020 - ACS Publications
Vibrational spectroscopy is an essential tool in chemical analyses, biological assays, and
studies of functional materials. Over the past decade, various coherent nonlinear vibrational …

Infrared probes for studying the structure and dynamics of biomolecules

H Kim, M Cho - Chemical reviews, 2013 - ACS Publications
The first step toward understanding most of the chemical and biological processes in
condensed phases is to accurately describe solute− solvent interaction energy and to …

Transparent window vibrational probes for the characterization of proteins with high structural and temporal resolution

R Adhikary, J Zimmermann, FE Romesberg - Chemical reviews, 2017 - ACS Publications
Vibrational spectroscopy provides a direct route to the physicochemical characterization of
molecules. While both IR and Raman spectroscopy have been used for decades to provide …

Site-specific spectroscopic reporters of the local electric field, hydration, structure, and dynamics of biomolecules

MM Waegele, RM Culik, F Gai - The journal of physical chemistry …, 2011 - ACS Publications
Elucidating the underlying molecular mechanisms of protein folding and function is a very
exciting and active research area, but poses significant challenges. This is due in part to the …

Nitrile groups as vibrational probes of biomolecular structure and dynamics: an overview

BA Lindquist, KE Furse, SA Corcelli - Physical chemistry chemical …, 2009 - pubs.rsc.org
This paper presents an overview of recent experiments and theoretical developments aimed
at using vibrational spectroscopy to understand the structure and dynamics of nitrile-labeled …

Machine learning for vibrational spectroscopic maps

AA Kananenka, K Yao, SA Corcelli… - Journal of Chemical …, 2019 - ACS Publications
Maps that relate spectroscopic properties of a vibrational mode and collective solvent
coordinates have proven useful in theoretical vibrational spectroscopy of condensed-phase …

Vibrational approach to the dynamics and structure of protein amyloids

H Li, R Lantz, D Du - Molecules, 2019 - mdpi.com
Amyloid diseases, including neurodegenerative diseases such as Alzheimer's and
Parkinson's, are linked to a poorly understood progression of protein misfolding and …

Towards a first-principles model of Fermi resonance in the alkyl CH stretch region: Application to 1, 2-diphenylethane and 2, 2, 2-paracyclophane

EG Buchanan, JC Dean, TS Zwier… - The Journal of Chemical …, 2013 - pubs.aip.org
The spectroscopy of two flexible hydrocarbons, 1, 2-diphenylethane (DPE) and 2, 2, 2-
paracyclophane (TCP) is presented, and a predictive theoretical model for describing the …

Modeling carbon dioxide vibrational frequencies in ionic liquids: II. Spectroscopic map

CA Daly Jr, EJ Berquist, T Brinzer… - The Journal of …, 2016 - ACS Publications
The primary challenge for connecting molecular dynamics (MD) simulations to linear and
two-dimensional infrared measurements is the calculation of the vibrational frequency for the …

Environment-and Conformation-Induced Frequency Shifts of C–D Vibrational Stark Probes in NAD (P) H Cofactors

SDE Fried, S Mukherjee, Y Mao… - The Journal of Physical …, 2024 - ACS Publications
NAD (P) H cofactors are found in all forms of life and are essential for electron and hydrogen
atom transfer. The linear response of a carbon–deuterium (C–D) vibration based on the …