Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
Adaptive sampling is a method of software-controlled enrichment unique to nanopore
sequencing platforms. To test its potential for enrichment of rarer species within …
sequencing platforms. To test its potential for enrichment of rarer species within …
DpCoA tagSeq: barcoding dpCoA-Capped RNA for direct nanopore sequencing via maleimide-thiol reaction
Recent discoveries of noncanonical RNA caps, such as nicotinamide adenine dinucleotide
(NAD+) and 3′-dephospho-coenzyme A (dpCoA), have expanded our knowledge of RNA …
(NAD+) and 3′-dephospho-coenzyme A (dpCoA), have expanded our knowledge of RNA …
Telomere‐to‐telomere Schizosaccharomyces japonicus genome assembly reveals hitherto unknown genome features
GJ Etherington, PS Wu, S Oliferenko, F Uhlmann… - Yeast, 2024 - Wiley Online Library
Schizosaccharomyces japonicus belongs to the single‐genus class Schizosaccharomycetes
, otherwise known as “fission yeasts.” As part of a composite model system with its widely …
, otherwise known as “fission yeasts.” As part of a composite model system with its widely …
High-Quality Genome Assembly of Fusarium oxysporum f. sp. lini
GS Krasnov, EN Pushkova, RO Novakovskiy… - Frontiers in …, 2020 - frontiersin.org
In the present work, a highly pathogenic isolate of Fusarium oxysporum f. sp. lini, which is
the most harmful pathogen affecting flax (Linum usitatissimum L.), was sequenced for the …
the most harmful pathogen affecting flax (Linum usitatissimum L.), was sequenced for the …
Measuring air metagenomic diversity in an agricultural ecosystem
All species shed DNA during life or in death, providing an opportunity to monitor biodiversity
via environmental DNA (eDNA). In recent years, combining eDNA, high-throughput …
via environmental DNA (eDNA). In recent years, combining eDNA, high-throughput …
Multiple Displacement Amplification Facilitates SMRT Sequencing of Microscopic Animals and the Genome of the Gastrotrich Lepidodermella squamata (Dujardin …
NG Roberts, MJ Gilmore, TH Struck… - Genome Biology and …, 2024 - academic.oup.com
Obtaining adequate DNA for long-read genome sequencing remains a roadblock to
producing contiguous genomes from small-bodied organisms, hindering understanding of …
producing contiguous genomes from small-bodied organisms, hindering understanding of …
Microsatellite break-induced replication generates highly mutagenized extrachromosomal circular DNAs
Extrachromosomal circular DNAs (eccDNAs) are produced from all regions of the eucaryotic
genome. We used inverse PCR of non-B microsatellites capable of forming hairpin, triplex …
genome. We used inverse PCR of non-B microsatellites capable of forming hairpin, triplex …
How low can you go? Driving down the DNA input requirements for nanopore sequencing
The requirement for large amounts of purified DNA limits many sequencing experiments,
especially when seeking to avoid pre-amplification or when using third generation …
especially when seeking to avoid pre-amplification or when using third generation …
[HTML][HTML] Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database
A Saltykova, J Van Braekel, N Papazova… - Food Chemistry …, 2022 - Elsevier
The increasing number and diversity of genetically modified organisms (GMOs) for the food
and feed market calls for the development of advanced methods for their detection and …
and feed market calls for the development of advanced methods for their detection and …
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim
Background Nanopore sequencing is crucial to metagenomic studies as its kilobase-long
reads can contribute to resolving genomic structural differences among microbes. However …
reads can contribute to resolving genomic structural differences among microbes. However …