Optical tweezers—from calibration to applications: a tutorial

J Gieseler, JR Gomez-Solano, A Magazzù… - Advances in Optics …, 2021 - opg.optica.org
Since their invention in 1986 by Arthur Ashkin and colleagues, optical tweezers have
become an essential tool in several fields of physics, spectroscopy, biology …

Thermodynamics of information processing in small systems

T Sagawa - Progress of theoretical physics, 2012 - academic.oup.com
We review a general theory of thermodynamics of information processing. The background
of this topic is the recently-developed nonequilibrium statistical mechanics and quantum …

Entropy production in field theories without time-reversal symmetry: quantifying the non-equilibrium character of active matter

C Nardini, É Fodor, E Tjhung, F Van Wijland, J Tailleur… - Physical Review X, 2017 - APS
Active-matter systems operate far from equilibrium because of the continuous energy
injection at the scale of constituent particles. At larger scales, described by coarse-grained …

Generalized Jarzynski equality under nonequilibrium feedback control

T Sagawa, M Ueda - Physical review letters, 2010 - APS
The Jarzynski equality is generalized to situations in which nonequilibrium systems are
subject to a feedback control. The new terms that arise as a consequence of the feedback …

Nonequilibrium thermodynamics of feedback control

T Sagawa, M Ueda - Physical Review E—Statistical, Nonlinear, and Soft …, 2012 - APS
We establish a general theory of feedback control on classical stochastic thermodynamic
systems and generalize nonequilibrium equalities such as the fluctuation theorem and the …

Nonequilibrium energetics of a single F1-ATPase molecule

S Toyabe, T Watanabe-Nakayama, T Okamoto… - Biophysical …, 2010 - cell.com
Moreover, we found that under a sufficiently strong torque in the opposite direction of ATP
hydrolytic rotations, it rotated in the opposite direction, or the ATP synthetic direction, in a …

Estimating time-dependent entropy production from non-equilibrium trajectories

S Otsubo, SK Manikandan, T Sagawa… - Communications …, 2022 - nature.com
The rate of entropy production provides a useful quantitative measure of a non-equilibrium
system and estimating it directly from time-series data from experiments is highly desirable …

Nonequilibrium energetics of molecular motor kinesin

T Ariga, M Tomishige, D Mizuno - Physical review letters, 2018 - APS
Nonequilibrium energetics of single molecule translational motor kinesin was investigated
by measuring heat dissipation from the violation of the fluctuation-response relation of a …

Learning entropy production via neural networks

DK Kim, Y Bae, S Lee, H Jeong - Physical Review Letters, 2020 - APS
This Letter presents a neural estimator for entropy production (NEEP), that estimates entropy
production (EP) from trajectories of relevant variables without detailed information on the …

Quantitative analysis of non-equilibrium systems from short-time experimental data

SK Manikandan, S Ghosh, A Kundu, B Das… - Communications …, 2021 - nature.com
Estimating entropy production directly from experimental trajectories is of great current
interest but often requires a large amount of data or knowledge of the underlying dynamics …