Bayesian statistics and modelling

R van de Schoot, S Depaoli, R King, B Kramer… - Nature Reviews …, 2021 - nature.com
Bayesian statistics is an approach to data analysis based on Bayes' theorem, where
available knowledge about parameters in a statistical model is updated with the information …

Hands-on Bayesian neural networks—A tutorial for deep learning users

LV Jospin, H Laga, F Boussaid… - IEEE Computational …, 2022 - ieeexplore.ieee.org
Modern deep learning methods constitute incredibly powerful tools to tackle a myriad of
challenging problems. However, since deep learning methods operate as black boxes, the …

Cell2location maps fine-grained cell types in spatial transcriptomics

V Kleshchevnikov, A Shmatko, E Dann… - Nature …, 2022 - nature.com
Spatial transcriptomic technologies promise to resolve cellular wiring diagrams of tissues in
health and disease, but comprehensive mapping of cell types in situ remains a challenge …

[HTML][HTML] A survey of uncertainty in deep neural networks

J Gawlikowski, CRN Tassi, M Ali, J Lee, M Humt… - Artificial Intelligence …, 2023 - Springer
Over the last decade, neural networks have reached almost every field of science and
become a crucial part of various real world applications. Due to the increasing spread …

A non-antibiotic-disrupted gut microbiome is associated with clinical responses to CD19-CAR-T cell cancer immunotherapy

CK Stein-Thoeringer, NY Saini, E Zamir… - Nature medicine, 2023 - nature.com
Increasing evidence suggests that the gut microbiome may modulate the efficacy of cancer
immunotherapy. In a B cell lymphoma patient cohort from five centers in Germany and the …

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness

F Obermeyer, M Jankowiak, N Barkas, SF Schaffner… - Science, 2022 - science.org
Repeated emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
variants with increased fitness underscores the value of rapid detection and characterization …

[HTML][HTML] A Python library for probabilistic analysis of single-cell omics data

A Gayoso, R Lopez, G Xing, P Boyeau… - Nature …, 2022 - nature.com
To the Editor—Methods for analyzing single-cell data 1, 2, 3, 4 perform a core set of
computational tasks. These tasks include dimensionality reduction, cell clustering, cell-state …

Epro-pnp: Generalized end-to-end probabilistic perspective-n-points for monocular object pose estimation

H Chen, P Wang, F Wang, W Tian… - Proceedings of the …, 2022 - openaccess.thecvf.com
Locating 3D objects from a single RGB image via Perspective-n-Points (PnP) is a long-
standing problem in computer vision. Driven by end-to-end deep learning, recent studies …

BoTorch: A framework for efficient Monte-Carlo Bayesian optimization

M Balandat, B Karrer, D Jiang… - Advances in neural …, 2020 - proceedings.neurips.cc
Bayesian optimization provides sample-efficient global optimization for a broad range of
applications, including automatic machine learning, engineering, physics, and experimental …

[HTML][HTML] Machine learning in python: Main developments and technology trends in data science, machine learning, and artificial intelligence

S Raschka, J Patterson, C Nolet - Information, 2020 - mdpi.com
Smarter applications are making better use of the insights gleaned from data, having an
impact on every industry and research discipline. At the core of this revolution lies the tools …