Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Principles and methods of integrative genomic analyses in cancer

VN Kristensen, OC Lingjærde, HG Russnes… - Nature Reviews …, 2014 - nature.com
Combined analyses of molecular data, such as DNA copy-number alteration, mRNA and
protein expression, point to biological functions and molecular pathways being deregulated …

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

PG Ferreira, P Jares, D Rico, G Gómez-López… - Genome …, 2014 - genome.cshlp.org
Chronic lymphocytic leukemia (CLL) has heterogeneous clinical and biological behavior.
Whole-genome and-exome sequencing has contributed to the characterization of the …

Multi-omics reveals clinically relevant proliferative drive associated with mTOR-MYC-OXPHOS activity in chronic lymphocytic leukemia

J Lu, E Cannizzaro, F Meier-Abt, S Scheinost… - Nature cancer, 2021 - nature.com
Chronic lymphocytic leukemia (CLL) has a complex pattern of driver mutations and much of
its clinical diversity remains unexplained. We devised a method for simultaneous subgroup …

High-level ROR1 associates with accelerated disease progression in chronic lymphocytic leukemia

B Cui, EM Ghia, L Chen, LZ Rassenti… - Blood, The Journal …, 2016 - ashpublications.org
ROR1 is an oncoembryonic orphan receptor found on chronic lymphocytic leukemia (CLL) B
cells, but not on normal postpartum tissues. ROR1 is a receptor for Wnt5a that may complex …

miR-150 influences B-cell receptor signaling in chronic lymphocytic leukemia by regulating expression of GAB1 and FOXP1

M Mraz, L Chen, LZ Rassenti, EM Ghia… - Blood, The Journal …, 2014 - ashpublications.org
We examined the microRNAs (miRNAs) expressed in chronic lymphocytic leukemia (CLL)
and identified miR-150 as the most abundant, but with leukemia cell expression levels that …

Protein-protein interaction networks: probing disease mechanisms using model systems

U Kuzmanov, A Emili - Genome medicine, 2013 - Springer
Protein-protein interactions (PPIs) and multi-protein complexes perform central roles in the
cellular systems of all living organisms. In humans, disruptions of the normal patterns of PPIs …

In silico investigations identified Butyl Xanalterate to competently target CK2α (CSNK2A1) for therapy of chronic lymphocytic leukemia

SA Alsagaby, D Iqbal, I Ahmad, H Patel, SA Mir… - Scientific reports, 2022 - nature.com
Chronic lymphocytic leukemia (CLL) is an incurable malignancy of B-cells. In this study,
bioinformatics analyses were conducted to identify possible pathogenic roles of CK2α …

The cancer cell map initiative: defining the hallmark networks of cancer

NJ Krogan, S Lippman, DA Agard, A Ashworth, T Ideker - Molecular cell, 2015 - cell.com
Progress in DNA sequencing has revealed the startling complexity of cancer genomes,
which typically carry thousands of somatic mutations. However, it remains unclear which are …

The Dohner fluorescence in situ hybridization prognostic classification of chronic lymphocytic leukaemia (CLL): the CLL Research Consortium experience

DL Van Dyke, L Werner, LZ Rassenti… - British journal of …, 2016 - Wiley Online Library
This study revisited the Dohner prognostic hierarchy in a cohort of 1585 well‐documented
patients with chronic lymphocytic leukaemia. The duration of both time to first treatment …