Antigen presentation in cancer—mechanisms and clinical implications for immunotherapy

K Yang, A Halima, TA Chan - Nature Reviews Clinical Oncology, 2023 - nature.com
Over the past decade, the emergence of effective immunotherapies has revolutionized the
clinical management of many types of cancers. However, long-term durable tumour control …

[HTML][HTML] Contemplating immunopeptidomes to better predict them

D Gfeller, Y Liu, J Racle - Seminars in Immunology, 2023 - Elsevier
The identification of T-cell epitopes is key for a complete molecular understanding of
immune recognition mechanisms in infectious diseases, autoimmunity and cancer. T-cell …

Immune-infiltrated kidney organoid-on-chip model for assessing T cell bispecific antibodies

KT Kroll, MM Mata, KA Homan… - Proceedings of the …, 2023 - National Acad Sciences
T cell bispecific antibodies (TCBs) are the focus of intense development for cancer
immunotherapy. Recently, peptide-MHC (major histocompatibility complex)-targeted TCBs …

Quantitative immunopeptidomics reveals a tumor stroma–specific target for T cell therapy

GB Kim, J Fritsche, S Bunk, A Mahr… - Science translational …, 2022 - science.org
T cell receptor (TCR)–based immunotherapy has emerged as a promising therapeutic
approach for the treatment of patients with solid cancers. Identifying peptide–human …

The SysteMHC Atlas v2. 0, an updated resource for mass spectrometry-based immunopeptidomics

X Huang, Z Gan, H Cui, T Lan, Y Liu… - Nucleic Acids …, 2024 - academic.oup.com
Abstract The SysteMHC Atlas v1. 0 was the first public repository dedicated to mass
spectrometry-based immunopeptidomics. Here we introduce a newly released version of the …

Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery

C Stutzmann, J Peng, Z Wu, C Savoie, I Sirois… - Cell Reports …, 2023 - cell.com
The identification of tumor-specific antigens (TSAs) is critical for developing effective cancer
immunotherapies. Mass spectrometry (MS)-based immunopeptidomics has emerged as a …

[HTML][HTML] The biogenesis of the immunopeptidome

A Admon - Seminars in Immunology, 2023 - Elsevier
The immunopeptidome is the repertoire of peptides bound and presented by the MHC class
I, class II, and non-classical molecules. The peptides are produced by the degradation of …

Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines

KA Kovalchik, DJ Hamelin, P Kubiniok… - Nature …, 2024 - nature.com
Next-generation T-cell-directed vaccines for COVID-19 focus on establishing lasting T-cell
immunity against current and emerging SARS-CoV-2 variants. Precise identification of …

MEK inhibition enhances presentation of targetable MHC-I tumor antigens in mutant melanomas

LE Stopfer, NJ Rettko, O Leddy… - Proceedings of the …, 2022 - National Acad Sciences
Combining multiple therapeutic strategies in NRAS/BRAF mutant melanoma—namely
MEK/BRAF kinase inhibitors, immune checkpoint inhibitors (ICIs), and targeted …

Transposable elements regulate thymus development and function

JD Larouche, CM Laumont, A Trofimov, K Vincent… - Elife, 2024 - elifesciences.org
Transposable elements (TEs) are repetitive sequences representing~ 45% of the human
and mouse genomes and are highly expressed by medullary thymic epithelial cells …