Genetic drift, selection and the evolution of the mutation rate

M Lynch, MS Ackerman, JF Gout, H Long… - Nature Reviews …, 2016 - nature.com
As one of the few cellular traits that can be quantified across the tree of life, DNA-replication
fidelity provides an excellent platform for understanding fundamental evolutionary …

Translational regulation of environmental adaptation in bacteria

R Tollerson, M Ibba - Journal of Biological Chemistry, 2020 - ASBMB
Bacteria must rapidly respond to both intracellular and environmental changes to survive.
One critical mechanism to rapidly detect and adapt to changes in environmental conditions …

Introns protect eukaryotic genomes from transcription-associated genetic instability

A Bonnet, AR Grosso, A Elkaoutari, E Coleno, A Presle… - Molecular cell, 2017 - cell.com
Transcription is a source of genetic instability that can notably result from the formation of
genotoxic DNA: RNA hybrids, or R-loops, between the nascent mRNA and its template. Here …

Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana

ML Weng, C Becker, J Hildebrandt, M Neumann… - Genetics, 2019 - academic.oup.com
Mutations are the ultimate source of all genetic variation. However, few direct estimates of
the contribution of mutation to molecular genetic variation are available. To address this …

RNA: a double-edged sword in genome maintenance

D Zong, P Oberdoerffer, PJ Batista… - Nature Reviews …, 2020 - nature.com
All organisms must safeguard the integrity of their DNA to avoid deleterious consequences
of genome instability, which have been linked to human diseases such as autoimmune …

Genome-wide probing of eukaryotic nascent RNA structure elucidates cotranscriptional folding and its antimutagenic effect

G Yu, Y Liu, Z Li, S Deng, Z Wu, X Zhang… - Nature …, 2023 - nature.com
The transcriptional intermediates of RNAs fold into secondary structures with multiple
regulatory roles, yet the details of such cotranscriptional RNA folding are largely unresolved …

Strengths and weaknesses of the current strategies to map and characterize R-loops

V Vanoosthuyse - Non-coding RNA, 2018 - mdpi.com
R-loops are evolutionarily conserved three-stranded structures that result from the formation
of stable DNA: RNA hybrids in the genome. R-loops have attracted increasing interest in …

Important genomic regions mutate less often than do other regions

J Zhang - 2022 - nature.com
Important genomic regions mutate less often than do other regions Skip to main content
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Recent insights into the evolution of mutation rates in yeast

RH Melde, K Bao, NP Sharp - Current opinion in genetics & development, 2022 - Elsevier
Mutation is the origin of all genetic variation, good and bad. The mutation process can
evolve in response to mutations, positive or negative selection, and genetic drift, but how …

Reduced intrinsic DNA curvature leads to increased mutation rate

C Duan, Q Huan, X Chen, S Wu, LB Carey, X He… - Genome biology, 2018 - Springer
Background Mutation rates vary across the genome. Many trans factors that influence
mutation rates have been identified, as have specific sequence motifs at the 1–7-bp scale …