Proteomic analysis of post-translational modifications

M Mann, ON Jensen - Nature biotechnology, 2003 - nature.com
Post-translational modifications modulate the activity of most eukaryote proteins. Analysis of
these modifications presents formidable challenges but their determination generates …

Quantitative mass spectrometry in proteomics: a critical review

M Bantscheff, M Schirle, G Sweetman, J Rick… - Analytical and …, 2007 - Springer
The quantification of differences between two or more physiological states of a biological
system is among the most important but also most challenging technical tasks in proteomics …

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

JV Olsen, B Blagoev, F Gnad, B Macek, C Kumar… - Cell, 2006 - cell.com
Cell signaling mechanisms often transmit information via posttranslational protein
modifications, most importantly reversible protein phosphorylation. Here we develop and …

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage

S Matsuoka, BA Ballif, A Smogorzewska… - science, 2007 - science.org
Cellular responses to DNA damage are mediated by a number of protein kinases, including
ATM (ataxia telangiectasia mutated) and ATR (ATM and Rad3-related). The outlines of the …

Mass spectrometry–based proteomics turns quantitative

SE Ong, M Mann - Nature chemical biology, 2005 - nature.com
The field of proteomics is built on technologies to analyze large numbers of proteins—ideally
the entire proteome—in the same experiment. Mass spectrometry (MS) has been …

Assembly of cell regulatory systems through protein interaction domains

T Pawson, P Nash - science, 2003 - science.org
The sequencing of complete genomes provides a list that includes the proteins responsible
for cellular regulation. However, this does not immediately reveal what these proteins do …

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

J Rush, A Moritz, KA Lee, A Guo, VL Goss… - Nature …, 2005 - nature.com
Tyrosine kinases play a prominent role in human cancer, yet the oncogenic signaling
pathways driving cell proliferation and survival have been difficult to identify, in part because …

Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry

ON Jensen - Current opinion in chemical biology, 2004 - Elsevier
Post-translational modifications generate tremendous diversity, complexity and
heterogeneity of gene products, and their determination is one of the main challenges in …

Proteomics: a pragmatic perspective

P Mallick, B Kuster - Nature biotechnology, 2010 - nature.com
The evolution of mass spectrometry–based proteomic technologies has advanced our
understanding of the complex and dynamic nature of proteomes while concurrently …

Regulation of the c-Abl and Bcr–Abl tyrosine kinases

O Hantschel, G Superti-Furga - Nature reviews Molecular cell biology, 2004 - nature.com
The prototypic non-receptor tyrosine kinase c-Abl is implicated in various cellular processes.
Its oncogenic counterpart, the Bcr–Abl fusion protein, causes certain human leukaemias …