Long non-coding RNAs: definitions, functions, challenges and recommendations

JS Mattick, PP Amaral, P Carninci… - … reviews Molecular cell …, 2023 - nature.com
Genes specifying long non-coding RNAs (lncRNAs) occupy a large fraction of the genomes
of complex organisms. The term 'lncRNAs' encompasses RNA polymerase I (Pol I), Pol II …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Disease-causing mutations and rearrangements in long non-coding RNA gene loci

M Aznaourova, N Schmerer, B Schmeck… - Frontiers in …, 2020 - frontiersin.org
The classic understanding of molecular disease-mechanisms is largely based on protein-
centric models. During the past decade however, genetic studies have identified numerous …

The “guiding” principles of noncoding RNA function

M Deogharia, P Gurha - Wiley Interdisciplinary Reviews: RNA, 2022 - Wiley Online Library
The human genome is pervasively transcribed and yet only a small fraction of these RNAs
(less than 2%) are known to code for proteins. The vast majority of the RNAs are classified …

lncRNA KHPS1 activates a poised enhancer by triplex-dependent recruitment of epigenomic regulators

A Blank-Giwojna, A Postepska-Igielska, I Grummt - Cell reports, 2019 - cell.com
Transcription of the proto-oncogene SPHK1 is regulated by KHPS1, an antisense RNA that
activates SPHK1 expression by forming a triple-helical RNA-DNA-DNA structure at the …

Isolation and genome-wide characterization of cellular DNA: RNA triplex structures

N Sentürk Cetin, CC Kuo, T Ribarska, R Li… - Nucleic acids …, 2019 - academic.oup.com
RNA can directly bind to purine-rich DNA via Hoogsteen base pairing, forming a DNA: RNA
triple helical structure that anchors the RNA to specific sequences and allows guiding of …

Serum exosomal lncRNA XIST is a potential non‐invasive biomarker to diagnose recurrence of triple‐negative breast cancer

F Lan, X Zhang, H Li, X Yue… - Journal of cellular and …, 2021 - Wiley Online Library
Exosomal lncRNAs secreted by cancer cells can serve as potential biomarkers in the
diagnosis and prognosis of various tumours. Here, we are committed to explore the …

METTL3‐stabilized super enhancers‐lncRNA SUCLG2‐AS1 mediates the formation of a long‐range chromatin loop between enhancers and promoters of SOX2 in …

X Hu, J Wu, Y Feng, H Ma, E Zhang… - Clinical and …, 2023 - Wiley Online Library
Background Super enhancers (SE) play pivotal roles in cell identity and diseases occur
including tumorigenesis. The depletion of SE‐associated lncRNA transcripts, also known as …

A Kuhnian revolution in molecular biology: Most genes in complex organisms express regulatory RNAs

JS Mattick - Bioessays, 2023 - Wiley Online Library
Thomas Kuhn described the progress of science as comprising occasional paradigm shifts
separated by interludes of 'normal science'. The paradigm that has held sway since the …

The talented LncRNAs: meshing into transcriptional regulatory networks in cancer

D Segal, J Dostie - Cancers, 2023 - mdpi.com
Simple Summary Long non-coding RNAs (lncRNAs) are a large class of RNA molecules
known to regulate the expression of genes. Although expressed in a highly tissue-specific …