Structural variation in the sequencing era

SS Ho, AE Urban, RE Mills - Nature Reviews Genetics, 2020 - nature.com
Identifying structural variation (SV) is essential for genome interpretation but has been
historically difficult due to limitations inherent to available genome technologies. Detection …

Next-generation sequencing strategies

SE Levy, BE Boone - Cold Spring Harbor …, 2019 - perspectivesinmedicine.cshlp.org
More than a decade ago, the term “next-generation” sequencing was coined to describe
what was, at the time, revolutionary new methods to sequence RNA and DNA at a faster …

[PDF][PDF] Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification.

M Wellenreuther, C Mérot, E Berdan… - Molecular ecology, 2019 - bio.ulaval.ca
Although single‐nucleotide polymorphism (SNPs) were initially thought to make‐up the
majority of selectable variation (Morin, Luikart, & Wayne, 2004; Sachidanandam et al …

Resolving the full spectrum of human genome variation using Linked-Reads

P Marks, S Garcia, AM Barrio, K Belhocine… - Genome …, 2019 - genome.cshlp.org
Large-scale population analyses coupled with advances in technology have demonstrated
that the human genome is more diverse than originally thought. To date, this diversity has …

Neotelomeres and telomere-spanning chromosomal arm fusions in cancer genomes revealed by long-read sequencing

KT Tan, MK Slevin, ML Leibowitz, M Garrity-Janger… - Cell Genomics, 2024 - cell.com
Alterations in the structure and location of telomeres are pivotal in cancer genome evolution.
Here, we applied both long-read and short-read genome sequencing to assess telomere …

Impact and characterization of serial structural variations across humans and great apes

W Höps, T Rausch, M Jendrusch, JO Korbel… - Nature …, 2024 - nature.com
Modern sequencing technology enables the systematic detection of complex structural
variation (SV) across genomes. However, extensive DNA rearrangements arising through a …

Applications of advanced technologies for detecting genomic structural variation

VA Laufer, TW Glover, TE Wilson - Mutation Research/Reviews in Mutation …, 2023 - Elsevier
Chromosomal structural variation (SV) encompasses a heterogenous class of genetic
variants that exerts strong influences on human health and disease. Despite their …

[HTML][HTML] Hybrid assembly of ultra-long Nanopore reads augmented with 10x-Genomics contigs: Demonstrated with a human genome

ZS Ma, L Li, C Ye, M Peng, YP Zhang - Genomics, 2019 - Elsevier
The 3rd generation of sequencing (3GS) technologies generate ultra-long reads (up to 1
Mb), which makes it possible to eliminate gaps and effectively resolve repeats in genome …

Detection of complex chromosome rearrangements using optical genome mapping

J Qu, S Li, D Yu - Gene, 2023 - Elsevier
Chromosomal structural variations (SVs) are a main cause of human genetic disease.
Currently, karyotype, chromosomal microarray analysis (CMA), and fluorescent in situ …

The Bioinformatic Applications of Hi-C and Linked Reads

L Jiang, MA Quail, J Fraser-Govil… - Genomics …, 2024 - academic.oup.com
Long-range sequencing grants insight into additional genetic information beyond what can
be accessed by both short reads and modern long-read technology. Several new …