iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis

KC Hsu, YF Chen, SR Lin, JM Yang - BMC bioinformatics, 2011 - Springer
Background Pharmacological interactions are useful for understanding ligand binding
mechanisms of a therapeutic target. These interactions are often inferred from a set of active …

New frontiers in druggability

D Kozakov, DR Hall, RL Napoleon… - Journal of Medicinal …, 2015 - ACS Publications
A powerful early approach to evaluating the druggability of proteins involved determining the
hit rate in NMR-based screening of a library of small compounds. Here, we show that a …

Predicting target–ligand interactions with graph convolutional networks for interpretable pharmaceutical discovery

P Ruiz Puentes, L Rueda-Gensini, N Valderrama… - Scientific reports, 2022 - nature.com
Drug Discovery is an active research area that demands great investments and generates
low returns due to its inherent complexity and great costs. To identify potential therapeutic …

Non-nucleoside inhibitors of human adenosine kinase: synthesis, molecular modeling, and biological studies

S Butini, S Gemma, M Brindisi, G Borrelli… - Journal of medicinal …, 2011 - ACS Publications
Adenosine kinase (AK) catalyzes the phosphorylation of adenosine (Ado) to AMP by means
of a kinetic mechanism in which the two substrates Ado and ATP bind the enzyme in a …

Quantitative Structure–Activity Relationship in the Series of 5-Ethyluridine, N2-Guanine, and 6-Oxopurine Derivatives with Pronounced Anti-Herpetic Activity

V Khairullina, Y Martynova - Molecules, 2023 - mdpi.com
A quantitative analysis of the relationship between the structure and inhibitory activity
against the herpes simplex virus thymidine kinase (HSV-TK) was performed for the series of …

One-pot synthesis of N-alkyl purine and pyrimidine derivatives from alcohols using TsIm: a rapid entry into carboacyclic nucleoside synthesis

MNS Rad, A Khalafi-Nezhad, S Behrouz, MA Faghihi… - Tetrahedron, 2008 - Elsevier
A convenient and efficient one-pot N-alkylation of nucleobases from alcohols using N-(p-
toluenesulfonyl) imidazole (TsIm) is described. In this method, treatment of alcohols with a …

Sensitivity of Monkey B Virus (Cercopithecine herpesvirus 1) to Antiviral Drugs: Role of Thymidine Kinase in Antiviral Activities of Substrate Analogs and …

F Focher, A Lossani, A Verri, S Spadari… - Antimicrobial agents …, 2007 - Am Soc Microbiol
Herpes B virus (B virus [BV]) is a macaque herpesvirus that is occasionally transmitted to
humans where it can cause rapidly ascending encephalitis that is often fatal. To understand …

Discovery, synthesis, and biological evaluation of piperidinol analogs with anti-tuberculosis activity

D Sun, MS Scherman, V Jones, JG Hurdle… - Bioorganic & medicinal …, 2009 - Elsevier
Direct anti-tuberculosis screening of commercially available compound libraries identified a
novel piperidinol with interesting anti-tuberculosis activity and drug like characteristics. To …

Palladium‐Catalyzed Regioselective C−H Oxidative Arylation of 7‐Azaindazole N‐Oxide at the C6‐Position

S Nassiri, M Bousmina, F Suzenet… - European Journal of …, 2023 - Wiley Online Library
A new strategy is reported for the C− H/C− H functionalization of 7‐azaindazoles at the C6‐
position through a regioselective oxidative arylation using N‐oxide activation. This …

Synthesis of tricarbonyl rhenium and technetium complexes of a 5′-carboxamide 5-ethyl-2′-deoxyuridine for selective inhibition of herpes simplex virus thymidine …

D Desbouis, PA Schubiger, R Schibli - Journal of organometallic chemistry, 2007 - Elsevier
Herpes simplex virus thymidine kinase type 1 (HSV1-TK) is frequently used as reporter
protein in gene therapy. Our aim is to produce single photon emitting reporter probe based …