Analysis of microbial compositions: a review of normalization and differential abundance analysis

H Lin, SD Peddada - NPJ biofilms and microbiomes, 2020 - nature.com
Increasingly, researchers are discovering associations between microbiome and a wide
range of human diseases such as obesity, inflammatory bowel diseases, HIV, and so on …

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

K Deiner, HM Bik, E Mächler, M Seymour… - Molecular …, 2017 - Wiley Online Library
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …

[HTML][HTML] A conceptual guide to measuring species diversity

M Roswell, J Dushoff, R Winfree - Oikos, 2021 - Wiley Online Library
Three metrics of species diversity–species richness, the Shannon index and the Simpson
index–are still widely used in ecology, despite decades of valid critiques leveled against …

Multiple elements of soil biodiversity drive ecosystem functions across biomes

M Delgado-Baquerizo, PB Reich, C Trivedi… - Nature ecology & …, 2020 - nature.com
The role of soil biodiversity in regulating multiple ecosystem functions is poorly understood,
limiting our ability to predict how soil biodiversity loss might affect human wellbeing and …

The geography of biodiversity change in marine and terrestrial assemblages

SA Blowes, SR Supp, LH Antão, A Bates, H Bruelheide… - Science, 2019 - science.org
Human activities are fundamentally altering biodiversity. Projections of declines at the global
scale are contrasted by highly variable trends at local scales, suggesting that biodiversity …

The number of tree species on Earth

R Cazzolla Gatti, PB Reich… - Proceedings of the …, 2022 - National Acad Sciences
One of the most fundamental questions in ecology is how many species inhabit the Earth.
However, due to massive logistical and financial challenges and taxonomic difficulties …

Climate change contributes to widespread declines among bumble bees across continents

P Soroye, T Newbold, J Kerr - Science, 2020 - science.org
Climate change could increase species' extinction risk as temperatures and precipitation
begin to exceed species' historically observed tolerances. Using long-term data for 66 …

[图书][B] Joint species distribution modelling: With applications in R

O Ovaskainen, N Abrego - 2020 - books.google.com
Joint species distribution modelling (JSDM) is a fast-developing field and promises to
revolutionise how data on ecological communities are analysed and interpreted. Written for …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

[图书][B] Metacommunity ecology, volume 59

MA Leibold, JM Chase - 2018 - degruyter.com
Metacommunity ecology links smaller-scale processes that have been the provenance of
population and community ecology—such as birth-death processes, species interactions …