Eukaryotic core promoters and the functional basis of transcription initiation

V Haberle, A Stark - Nature reviews Molecular cell biology, 2018 - nature.com
Abstract RNA polymerase II (Pol II) core promoters are specialized DNA sequences at
transcription start sites of protein-coding and non-coding genes that support the assembly of …

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

B Lenhard, A Sandelin, P Carninci - Nature Reviews Genetics, 2012 - nature.com
Promoters are crucial for gene regulation. They vary greatly in terms of associated regulatory
elements, sequence motifs, the choice of transcription start sites and other features. Several …

Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation

MA Zabidi, CD Arnold, K Schernhuber, M Pagani… - Nature, 2015 - nature.com
Gene transcription in animals involves the assembly of RNA polymerase II at core promoters
and its cell-type-specific activation by enhancers that can be located more distally. However …

The Many Landscapes of Recombination in Drosophila melanogaster

JM Comeron, R Ratnappan, S Bailin - 2012 - journals.plos.org
Recombination is a fundamental biological process with profound evolutionary implications.
Theory predicts that recombination increases the effectiveness of selection in natural …

[HTML][HTML] Regulation of gene expression via the core promoter and the basal transcriptional machinery

T Juven-Gershon, JT Kadonaga - Developmental biology, 2010 - Elsevier
The RNA polymerase II core promoter is a structurally and functionally diverse
transcriptional regulatory element. There are two main strategies for transcription initiation …

Resolving systematic errors in widely used enhancer activity assays in human cells

F Muerdter, ŁM Boryń, AR Woodfin, C Neumayr… - Nature …, 2018 - nature.com
The identification of transcriptional enhancers in the human genome is a prime goal in
biology. Enhancers are typically predicted via chromatin marks, yet their function is primarily …

The core promoter: At the heart of gene expression

YM Danino, D Even, D Ideses… - Biochimica et Biophysica …, 2015 - Elsevier
The identities of different cells and tissues in multicellular organisms are determined by
tightly controlled transcriptional programs that enable accurate gene expression. The …

The RNA polymerase II core promoter—the gateway to transcription

T Juven-Gershon, JY Hsu, JWM Theisen… - Current opinion in cell …, 2008 - Elsevier
The RNA polymerase II core promoter is generally defined to be the sequence that directs
the initiation of transcription. This simple definition belies a diverse and complex …

Perspectives on the RNA polymerase II core promoter

JT Kadonaga - Wiley Interdisciplinary Reviews: Developmental …, 2012 - Wiley Online Library
The RNA polymerase II core promoter is sometimes referred to as the gateway to
transcription. The core promoter is generally defined to be the stretch of DNA that directs the …

Defining the status of RNA polymerase at promoters

LJ Core, JJ Waterfall, DA Gilchrist, DC Fargo, H Kwak… - Cell reports, 2012 - cell.com
Recent genome-wide studies in metazoans have shown that RNA polymerase II (Pol II)
accumulates to high densities on many promoters at a rate-limited step in transcription …