[HTML][HTML] Revisiting the amalgaviral landscapes in plant transcriptomes expands the host range of plant amalgaviruses

VK Sidharthan, V Rajeswari, G Vanamala… - Virology, 2022 - Elsevier
Plant amalgaviruses are monopartite, double-stranded RNA viruses, capable of vertical
transmission through seeds. An attempt to revisit plant transcriptome-assembled contigs for …

RNA-seq reveals plant virus composition and diversity in alfalfa, thrips, and aphids in Beijing, China

J Li, H Gu, Y Liu, S Wei, G Hu, X Wang, MR McNeill… - Archives of …, 2021 - Springer
Viruses are widespread in alfalfa (Medicago sativa L.), representing a key limitation to the
production of this important forage plant. Understanding the diversity of plant viruses in …

Identification of novel RNA viruses in alfalfa (Medicago sativa): an Alphapartitivirus, a Deltapartitivirus, and a Marafivirus

H Kim, D Park, Y Hahn - Gene, 2018 - Elsevier
Genomic RNA molecules of plant RNA viruses are often co-isolated with the host RNAs, and
their sequences can be detected in plant transcriptome datasets. Here, an alfalfa (Medicago …

Rapid protein sequence evolution via compensatory frameshift is widespread in RNA virus genomes

D Park, Y Hahn - BMC bioinformatics, 2021 - Springer
Background RNA viruses possess remarkable evolutionary versatility driven by the high
mutability of their genomes. Frameshifting nucleotide insertions or deletions (indels), which …

[HTML][HTML] Identification of two novel amalgaviruses in the common eelgrass (Zostera marina) and in silico analysis of the amalgavirus+ 1 programmed ribosomal …

D Park, CJ Goh, H Kim, Y Hahn - The plant pathology journal, 2018 - ncbi.nlm.nih.gov
The genome sequences of two novel monopartite RNA viruses were identified in a common
eelgrass (Zostera marina) transcriptome dataset. Sequence comparison and phylogenetic …

High-throughput RNA sequencing analysis of Mallotus japonicus revealed novel polerovirus and amalgavirus

D Choi, M Rai, A Rai, C Shin, M Yamazaki… - Acta …, 2023 - scholarworks.bwise.kr
High-throughput RNA sequencing (RNA-seq) analysis of samples from Mallotus japonicus,
a traditional medicinal plant, yielded two novel RNA viruses tentatively named Mallotus …

The complete genome sequence of a novel mycovirus in the plant-pathogenic fungus Exobasidium gracile

L Teng, X Li, X Cai, S Yang, H Liu, T Zhang - Archives of Virology, 2022 - Springer
The plant-pathogenic fungus Exobasidium gracile belongs to the basidiomycetous genus
Exobasidium and causes leaf abnormalities in Camellia oleifera. Here, we report a novel …

Public Domain Databases: A Gold Mine for Identification and Genome Reconstruction of Plant Viruses and Viroids

VK Sidharthan, VK Baranwal - Genomics Data Analysis for Crop …, 2024 - Springer
Plant viruses deprive the host due to their replication in the infected cells by hijacking the
host machinery and thereby affecting the quality and quantity of economic produce. In recent …

Complete genome sequence of Aconitum amalgavirus 1, a distinct member of the genus Amalgavirus

J Yang, PX Lan, JM Li, XJ Chen, GL Tan, TY Wei… - Archives of …, 2022 - Springer
A novel virus named Aconitum amalgavirus 1 (AcoAV-1) was identified in Chinese aconite
(Aconitum carmichaelii) plants. The complete genome of AcoAV-1 is 3,370 nucleotides long …

Identification of a novel plant RNA virus species of the genus Amalgavirus in the family Amalgaviridae from chia (Salvia hispanica)

JS Lee, CJ Goh, D Park, Y Hahn - Genes & genomics, 2019 - Springer
Abstract Background Chia (Salvia hispanica) is a flowering plant in the family Lamiaceae,
which produces seeds that are a rich source of various nutritional compounds. Objective To …