ReadBouncer: precise and scalable adaptive sampling for nanopore sequencing

JU Ulrich, A Lutfi, K Rutzen, BY Renard - Bioinformatics, 2022 - academic.oup.com
Motivation Nanopore sequencers allow targeted sequencing of interesting nucleotide
sequences by rejecting other sequences from individual pores. This feature facilitates the …

[PDF][PDF] Potential applications of nanopore sequencing for forensic analysis

CL Hall, RR Zascavage, FJ Sedlazeck… - Forensic science …, 2020 - researchgate.net
DNA evidence has long been considered the gold standard for human identification in
forensic investigations. Forensic genetic analyses may harness the information within …

[HTML][HTML] A controlled method for the identification of forensic traces from clandestine grave fill

B Chapman, C Cameron, D Keatley… - Forensic science …, 2024 - Elsevier
Deceased human remains are often buried as a forensic countermeasure or method of
disposal by homicide perpetrators. Owing to this, the excavation of clandestine grave sites is …

Estimating individual mtDNA haplotypes in mixed DNA samples by combining MinION and MiSeq

H Nakanishi, K Yoneyama, M Hara, A Takada… - International Journal of …, 2022 - Springer
We tried to estimate individual mtDNA haplotypes in mixed DNA samples by combining
MinION and MiSeq. The BAM files produced by MiSeq were viewed using Integrative …

Brazilian forensic casework analysis through MPS applications: Statistical weight-of-evidence and biological nature of criminal samples as an influence factor in …

E Avila, CP Cavalheiro, AB Felkl, P Graebin… - Forensic science …, 2019 - Elsevier
Real forensic casework biological evidence can be found in a myriad of different conditions
and presenting very distinct features, including key elements such as degradation levels, the …

Predicting decision-making time for diagnosis over ngs cycles: An interpretable machine learning approach

A Khodabakhsh, TP Loka, S Boutin, D Nurjadi… - bioRxiv, 2023 - biorxiv.org
Motivation Genome sequencing processes are commonly followed by computational
analysis in medical diagnosis. The analyses are generally performed once the sequencing …

DIYNAFLUOR: An Affordable DIY Plug-and-Play Nucleic Acid Fluorometer for eDNA Quantification in Resource Limited Settings

W Anderson, F Antaw, S Kenny, H Rupani, R Khamis… - bioRxiv, 2024 - biorxiv.org
Nucleic Acid (NA) fluorometry is widely employed for quantifying environmental DNA
(eDNA) samples and their downstream DNA sequencing libraries, owing to its sensitivity …

Techniques for the advancement of unsolved and cold cases

B Chapman - 2024 - researchportal.murdoch.edu.au
Abstract Unsolved, or “cold” cases, are those when the opportunities for apprehending and
convicting an offender are exhausted. Often, these case files and evidence sit in a state of …

Advanced Methods for Real-time Metagenomic Analysis of Nanopore Sequencing Data

JU Ulrich - 2023 - refubium.fu-berlin.de
Whole shotgun metagenomics sequencing allows researchers to retrieve information about
all organisms in a complex sample. This method enables microbiologists to detect …

Analysis Comparison for Rapid Identification of Pathogenic Virus from Infected Tissue Samples

J Hosokawa-Muto, Y Sassa-O'Brien, Y Fujinami… - Diagnostics, 2022 - mdpi.com
When examining infectious samples, rapid identification of the pathogenic agent is required
for diagnosis and treatment or for investigating the cause of death. In our previous study, we …