Avian genomics: fledging into the wild!

RHS Kraus, M Wink - Journal of Ornithology, 2015 - Springer
Next generation sequencing (NGS) technologies provide great resources to study bird
evolution and avian functional genomics. They also allow for the identification of suitable …

Development, Characterization, and Linkage Mapping of Single Nucleotide Polymorphisms in the Grain Amaranths (Amaranthus sp.)

PJ Maughan, SM Smith, DJ Fairbanks… - The Plant …, 2011 - Wiley Online Library
The grain amaranths (Amaranthus sp.) are important pseudo‐cereals native to the New
World. During the last decade they have garnered increased international attention for their …

SNP discovery via genomic reduction, barcoding, and 454‐pyrosequencing in amaranth

PJ Maughan, SM Yourstone, EN Jellen… - The plant …, 2009 - Wiley Online Library
The grain amaranths are important pseudo‐cereals native to the New World. During the last
decade they have garnered increased international attention for their nutritional quality …

Infrequent extra-pair paternity in the banded wren, a synchronously breeding tropical passerine

ERA Cramer, ML Hall, SRD Kort, IJ Lovette… - The Condor, 2011 - academic.oup.com
Many species of socially monogamous birds engage in extra-pair copulations, but the extent
of extra-pair paternity varies considerably by species. The ecological conditions contributing …

Exonic versus intronic SNPs: contrasting roles in revealing the population genetic differentiation of a widespread bird species

X Zhan, A Dixon, N Batbayar, E Bragin, Z Ayas… - Heredity, 2015 - nature.com
Recent years have seen considerable progress in applying single nucleotide
polymorphisms (SNPs) to population genetics studies. However, relatively few have …

Genome-wide single nucleotide polymorphism (SNP) identification and characterization in a non-model organism, the African buffalo (Syncerus caffer), using next …

N Smitz, P Van Hooft, R Heller, D Cornélis… - Mammalian …, 2016 - Springer
This study aimed to develop a set of SNP markers with high resolution and accuracy within
the African buffalo. Such a set can be used, among others, to depict subtle population …

Single‐Nucleotide Polymorphism Genotyping in Mapping Populations via Genomic Reduction and Next‐Generation Sequencing: Proof of Concept

PJ Maughan, SM Yourstone, RL Byers… - The Plant …, 2010 - Wiley Online Library
We report the results of a proof‐of‐concept experiment that validates the use of multiplex
identifier (MID) barcodes and next‐generation sequencing (454‐pyrosequencing and …

A simple route to single‐nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida)

MT Olsen, VH Volny, M Berube, R Dietz… - Molecular Ecology …, 2011 - Wiley Online Library
Although single‐nucleotide polymorphisms (SNPs) have become the marker of choice in the
field of human genetics, these markers are only slowly emerging in ecological, evolutionary …

[PDF][PDF] The variation of indigenous upland rice landraces in ratchaburi, thailand based on seed morphology and dna sequencing

P Phunngam, N Pathumrangsan… - Journal of Advanced …, 2017 - academia.edu
Ratchaburi, Thailand was investigated using seed morphology and DNA sequences. This
information is useful for understanding the extent of diverse level of rice landraces in order to …

An assessment of genetic diversity and inbreeding in the noisy scrub-bird (Atrichornis clamosus) using microsatellite and major histocompatibility complex loci

SJ Cowen - 2014 - espace.curtin.edu.au
The noisy scrub-bird is an endangered songbird restricted to the south coast of Western
Australia and has a history of population bottlenecks. This study evaluated the impact that …