Top 10 plant pathogenic bacteria in molecular plant pathology

J Mansfield, S Genin, S Magori… - Molecular plant …, 2012 - Wiley Online Library
Many plant bacteriologists, if not all, feel that their particular microbe should appear in any
list of the most important bacterial plant pathogens. However, to our knowledge, no such list …

Jasmonate signaling and manipulation by pathogens and insects

L Zhang, F Zhang, M Melotto, J Yao… - Journal of experimental …, 2017 - academic.oup.com
Plants synthesize jasmonates (JAs) in response to developmental cues or environmental
stresses, in order to coordinate plant growth, development or defense against pathogens …

Rfam: annotating non-coding RNAs in complete genomes

S Griffiths-Jones, S Moxon, M Marshall… - Nucleic acids …, 2005 - academic.oup.com
Rfam is a comprehensive collection of non-coding RNA (ncRNA) families, represented by
multiple sequence alignments and profile stochastic context-free grammars. Rfam aims to …

Genomics of secondary metabolite production by Pseudomonas spp.

H Gross, JE Loper - Natural product reports, 2009 - pubs.rsc.org
Covering: up to June 2009 Pseudomonas is a diverse genus of Gammaproteobacteria with
more than 60 species exhibiting varied life styles in a wide range of environments, including …

Cytotoxic chromosomal targeting by CRISPR/Cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands

RB Vercoe, JT Chang, RL Dy, C Taylor… - PLoS …, 2013 - journals.plos.org
In prokaryotes, clustered regularly interspaced short palindromic repeats (CRISPRs) and
their associated (Cas) proteins constitute a defence system against bacteriophages and …

Innate Immune Responses Activated in Arabidopsis Roots by Microbe-Associated Molecular Patterns

YA Millet, CH Danna, NK Clay, W Songnuan… - The Plant …, 2010 - academic.oup.com
Despite the fact that roots are the organs most subject to microbial interactions, very little is
known about the response of roots to microbe-associated molecular patterns (MAMPs). By …

Using OrthoMCL to assign proteins to OrthoMCL‐DB groups or to cluster proteomes into new ortholog groups

S Fischer, BP Brunk, F Chen, X Gao… - Current protocols in …, 2011 - Wiley Online Library
OrthoMCL is an algorithm for grouping proteins into ortholog groups based on their
sequence similarity. OrthoMCL‐DB is a public database that allows users to browse and …

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

M Sebaihia, BW Wren, P Mullany, NF Fairweather… - Nature …, 2006 - nature.com
We determined the complete genome sequence of Clostridium difficile strain 630, a virulent
and multidrug-resistant strain. Our analysis indicates that a large proportion (11%) of the …

A catalogue of the effector secretome of plant pathogenic oomycetes

S Kamoun - Annu. Rev. Phytopathol., 2006 - annualreviews.org
The oomycetes form a phylogenetically distinct group of eukaryotic microorganisms that
includes some of the most notorious pathogens of plants. Oomycetes accomplish parasitic …

CRISPRTarget: bioinformatic prediction and analysis of crRNA targets

A Biswas, JN Gagnon, SJJ Brouns, PC Fineran… - RNA biology, 2013 - Taylor & Francis
The bacterial and archaeal CRISPR/Cas adaptive immune system targets specific
protospacer nucleotide sequences in invading organisms. This requires base pairing …