Computational tools for the analysis of uncultivated phage genomes
JS Andrade-Martínez, LC Camelo Valera… - Microbiology and …, 2022 - Am Soc Microbiol
Over a century of bacteriophage research has uncovered a plethora of fundamental aspects
of their biology, ecology, and evolution. Furthermore, the introduction of community-level …
of their biology, ecology, and evolution. Furthermore, the introduction of community-level …
Structural and genomic diversity of bacteriophages
B Ely, J Lenski, T Mohammadi - Bacteriophages: Methods and Protocols, 2023 - Springer
Bacteriophage diversity is a relatively unknown frontier that is rapidly being explored,
leading to a wealth of new information. New bacteriophages are being discovered at an …
leading to a wealth of new information. New bacteriophages are being discovered at an …
Prokaryotic and viral genomes recovered from 787 Japanese gut metagenomes revealed microbial features linked to diets, populations, and diseases
Summary We reconstructed 19,084 prokaryotic and 31,395 viral genomes from 787
Japanese gut metagenomes as Japanese metagenome-assembled genomes (JMAG) and …
Japanese gut metagenomes as Japanese metagenome-assembled genomes (JMAG) and …
CrAssphage may be viable markers of contamination in pristine and Contaminated River water
Viruses are the most biologically abundant entities and may be ideal indicators of fecal
pollutants in water. Anthropogenic activities have triggered drastic ecosystem changes in …
pollutants in water. Anthropogenic activities have triggered drastic ecosystem changes in …
Strain-level dynamics reveal regulatory roles in atopic eczema by gut bacterial phages
Y Chu, Q Meng, J Yu, J Zhang, J Chen… - Microbiology …, 2023 - Am Soc Microbiol
The vast population of bacterial phages or viruses (virome) plays pivotal roles in the ecology
of human microbial flora and health conditions. Obstacles, including poor viral sequence …
of human microbial flora and health conditions. Obstacles, including poor viral sequence …
Assessing phage-host population dynamics by reintroducing virulent viruses to synthetic microbiomes
Microbiomes feature complex interactions between diverse bacteria and bacteriophages.
Synthetic microbiomes offer a powerful way to study these interactions; however, a major …
Synthetic microbiomes offer a powerful way to study these interactions; however, a major …
Mriyaviruses: small relatives of giant viruses
N Yutin, P Mutz, M Krupovic, EV Koonin - Mbio, 2024 - Am Soc Microbiol
The phylum Nucleocytoviricota consists of large and giant viruses that range in genome size
from about 100 kilobases (kb) to more than 2.5 megabases. Here, using metagenome …
from about 100 kilobases (kb) to more than 2.5 megabases. Here, using metagenome …
Host translation machinery is not a barrier to phages that interact with both CPR and non-CPR bacteria
ABSTRACT Within human microbiomes, Gracilibacteria, Absconditabacteria, and
Saccharibacteria, members of Candidate Phyla Radiation (CPR), are increasingly correlated …
Saccharibacteria, members of Candidate Phyla Radiation (CPR), are increasingly correlated …
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B Ely, J Lenski, T Mohammadi - Bacteriophages: Methods and …, 2023 - books.google.com
Bacteriophage diversity is a relatively unknown frontier that is rapidly being explored,
leading to a wealth of new information. New bacteriophages are being discovered at an …
leading to a wealth of new information. New bacteriophages are being discovered at an …