[HTML][HTML] The current understanding of KRAS protein structure and dynamics

T Pantsar - Computational and structural biotechnology journal, 2020 - Elsevier
One of the most common drivers in human cancer is the mutant KRAS protein. Not so long
ago KRAS was considered as an undruggable oncoprotein. After a long struggle, however …

Mutation-induced impacts on the switch transformations of the GDP-and GTP-bound K-ras: Insights from multiple replica Gaussian accelerated molecular dynamics …

J Chen, S Zhang, W Wang, L Pang… - Journal of Chemical …, 2021 - ACS Publications
Mutations yield significant effect on the structural flexibility of two switch domains, SW1 and
SW2, in K-Ras, which is considered as an important target of anticancer drug design. To …

Excited-state observation of active K-Ras reveals differential structural dynamics of wild-type versus oncogenic G12D and G12C mutants

AL Hansen, X Xiang, C Yuan… - Nature Structural & …, 2023 - nature.com
Despite the prominent role of the K-Ras protein in many different types of human cancer,
major gaps in atomic-level information severely limit our understanding of its functions in …

Intrinsically disordered proteins: ensembles at the limits of Anfinsen's dogma

P Kulkarni, VBP Leite, S Roy, S Bhattacharyya… - Biophysics …, 2022 - pubs.aip.org
Intrinsically disordered proteins (IDPs) are proteins that lack rigid 3D structure. Hence, they
are often misconceived to present a challenge to Anfinsen's dogma. However, IDPs exist as …

The small GTPases K-Ras, N-Ras, and H-Ras have distinct biochemical properties determined by allosteric effects

CW Johnson, D Reid, JA Parker, S Salter… - Journal of Biological …, 2017 - ASBMB
H-Ras, K-Ras, and N-Ras are small GTPases that are important in the control of cell
proliferation, differentiation, and survival, and their mutants occur frequently in human …

Conformational transformation of switch domains in GDP/K-Ras induced by G13 mutants: An investigation through Gaussian accelerated molecular dynamics …

J Chen, L Wang, W Wang, H Sun, L Pang… - Computers in Biology and …, 2021 - Elsevier
Mutations in K-Ras are involved in a large number of all human cancers, thus, K-Ras is
regarded as a promising target for anticancer drug design. Understanding the target roles of …

Discovery of high-affinity noncovalent allosteric KRAS inhibitors that disrupt effector binding

MJ McCarthy, CV Pagba, P Prakash, AK Naji… - ACS …, 2019 - ACS Publications
Approximately 15% of all human tumors harbor mutant KRAS, a membrane-associated
small GTPase and notorious oncogene. Mutations that render KRAS constitutively active will …

Isoform-specific destabilization of the active site reveals a molecular mechanism of intrinsic activation of KRas G13D

CW Johnson, YJ Lin, D Reid, J Parker, S Pavlopoulos… - Cell reports, 2019 - cell.com
Ras GTPases are mutated at codons 12, 13, and 61, with different frequencies in KRas,
HRas, and NRas and in a cancer-specific manner. The G13D mutant appears in 25% of …

Q61 mutant-mediated dynamics changes of the GTP-KRAS complex probed by Gaussian accelerated molecular dynamics and free energy landscapes

J Chen, Q Zeng, W Wang, Q Hu, H Bao - RSC advances, 2022 - pubs.rsc.org
Understanding the molecular mechanism of the GTP-KRAS binding is significant for
improving the target roles of KRAS in cancer treatment. In this work, multiple replica …

Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state …

T Pantsar, S Rissanen, D Dauch… - PLoS computational …, 2018 - journals.plos.org
A mutated KRAS protein is frequently observed in human cancers. Traditionally, the
oncogenic properties of KRAS missense mutants at position 12 (G12X) have been …