Deciphering the multi-scale, quantitative cis-regulatory code

S Kim, J Wysocka - Molecular cell, 2023 - cell.com
Uncovering the cis-regulatory code that governs when and how much each gene is
transcribed in a given genome and cellular state remains a central goal of biology. Here, we …

Energy-driven genome regulation by ATP-dependent chromatin remodellers

S Eustermann, AB Patel, KP Hopfner, Y He… - … Reviews Molecular Cell …, 2024 - nature.com
The packaging of DNA into chromatin in eukaryotes regulates gene transcription, DNA
replication and DNA repair. ATP-dependent chromatin remodelling enzymes (re) arrange …

The BAF chromatin remodeler synergizes with RNA polymerase II and transcription factors to evict nucleosomes

S Brahma, S Henikoff - Nature genetics, 2024 - nature.com
Chromatin accessibility is a hallmark of active transcription and entails ATP-dependent
nucleosome remodeling, which is carried out by complexes such as Brahma-associated …

Chromatin remodellers as therapeutic targets

HA Malone, CWM Roberts - Nature Reviews Drug Discovery, 2024 - nature.com
Large-scale cancer genome sequencing studies have revealed that chromatin regulators
are frequently mutated in cancer. In particular, more than 20% of cancers harbour mutations …

ARID1A orchestrates SWI/SNF-mediated sequential binding of transcription factors with ARID1A loss driving pre-memory B cell fate and lymphomagenesis

D Barisic, CR Chin, C Meydan, M Teater, I Tsialta… - Cancer cell, 2024 - cell.com
ARID1A, a subunit of the canonical BAF nucleosome remodeling complex, is commonly
mutated in lymphomas. We show that ARID1A orchestrates B cell fate during the germinal …

Pioneer factors—key regulators of chromatin and gene expression

ML Bulyk, J Drouin, MM Harrison, J Taipale… - Nature Reviews …, 2023 - nature.com
Pioneer factors are a group of transcription factors with important roles in gene regulation
during development. Their unique ability to bind to compacted chromatin, promoting its …

Multifunctional intrinsically disordered regions in transcription factors

M Már, K Nitsenko… - Chemistry–A European …, 2023 - Wiley Online Library
Eukaryotic transcription factors (TFs) are the final integrators of a complex molecular
feedback mechanism that interfaces with the genome, consolidating information for …

Transcriptional network dynamics in early T cell development

B Shin, SJ Chang, BW MacNabb… - Journal of Experimental …, 2024 - rupress.org
The rate at which cells enter the T cell pathway depends not only on the immigration of
hematopoietic precursors into the strong Notch signaling environment of the thymus but also …

Rise and SINE: Roles of transcription factors and retrotransposons in zygotic genome activation

P Kravchenko, K Tachibana - Nature Reviews Molecular Cell Biology, 2024 - nature.com
In sexually reproducing organisms, life begins with the fusion of transcriptionally silent
gametes, the oocyte and sperm. Although initiation of transcription in the embryo, known as …

Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity

N Goldman, A Chandra, I Johnson, MA Sullivan… - Nature …, 2023 - nature.com
In development, pioneer transcription factors access silent chromatin to reveal lineage-
specific gene programs. The structured DNA-binding domains of pioneer factors have been …