A travel guide to Cytoscape plugins
Cytoscape is open-source software for integration, visualization and analysis of biological
networks. It can be extended through Cytoscape plugins, enabling a broad community of …
networks. It can be extended through Cytoscape plugins, enabling a broad community of …
Making proteomics data accessible and reusable: current state of proteomics databases and repositories
Y Perez‐Riverol, E Alpi, R Wang, H Hermjakob… - …, 2015 - Wiley Online Library
Compared to other data‐intensive disciplines such as genomics, public deposition and
storage of MS‐based proteomics, data are still less developed due to, among other reasons …
storage of MS‐based proteomics, data are still less developed due to, among other reasons …
[HTML][HTML] Systems biology and multi-omics integration: viewpoints from the metabolomics research community
The use of multiple omics techniques (ie, genomics, transcriptomics, proteomics, and
metabolomics) is becoming increasingly popular in all facets of life science. Omics …
metabolomics) is becoming increasingly popular in all facets of life science. Omics …
Cytoscape: software for visualization and analysis of biological networks
Substantial progress has been made in the field of “omics” research (eg, Genomics,
Transcriptomics, Proteomics, and Metabolomics), leading to a vast amount of biological …
Transcriptomics, Proteomics, and Metabolomics), leading to a vast amount of biological …
STRING 8—a global view on proteins and their functional interactions in 630 organisms
Functional partnerships between proteins are at the core of complex cellular phenotypes,
and the networks formed by interacting proteins provide researchers with crucial scaffolds …
and the networks formed by interacting proteins provide researchers with crucial scaffolds …
Person re-identification by deep learning attribute-complementary information
A Schumann, R Stiefelhagen - Proceedings of the IEEE …, 2017 - openaccess.thecvf.com
Automatic person re-identification (re-id) across camera boundaries is a challenging
problem. Approaches have to be robust against many factors which influence the visual …
problem. Approaches have to be robust against many factors which influence the visual …
AMPK promotes mitochondrial biogenesis and function by phosphorylating the epigenetic factors DNMT1, RBBP7, and HAT1
Adenosine monophosphate (AMP)–activated protein kinase (AMPK) acts as a master
regulator of cellular energy homeostasis by directly phosphorylating metabolic enzymes and …
regulator of cellular energy homeostasis by directly phosphorylating metabolic enzymes and …
KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor
Motivation: KEGG PATHWAY is a service of Kyoto Encyclopedia of Genes and Genomes
(KEGG), constructing manually curated pathway maps that represent current knowledge on …
(KEGG), constructing manually curated pathway maps that represent current knowledge on …
Mev: multiexperiment viewer
E Howe, K Holton, S Nair, D Schlauch, R Sinha… - … informatics for cancer …, 2010 - Springer
Abstract MultiExperiment Viewer (MeV) is a freely available software application that puts
modern bioinformatics tools for integrative data analysis in the hands of bench biologists …
modern bioinformatics tools for integrative data analysis in the hands of bench biologists …
Adaptation of cells to new environments
The evolutionary success of an organism is a testament to its inherent capacity to keep pace
with environmental conditions that change over short and long periods. Mechanisms …
with environmental conditions that change over short and long periods. Mechanisms …