Challenges of unculturable bacteria: environmental perspectives

A Bodor, N Bounedjoum, GE Vincze… - … Science and Bio …, 2020 - Springer
Environmental biotechnology offers several promising techniques for the rehabilitation of
polluted environments. The modern industrialized world presents novel challenges to the …

The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota

JC Lagier, P Hugon, S Khelaifia… - Clinical microbiology …, 2015 - Am Soc Microbiol
Bacterial culture was the first method used to describe the human microbiota, but this
method is considered outdated by many researchers. Metagenomics studies have since …

High proportions of bacteria and archaea across most biomes remain uncultured

AD Steen, A Crits-Christoph, P Carini… - The ISME …, 2019 - academic.oup.com
A recent paper by Martiny argues that “high proportions” of bacteria in diverse Earth
environments have been cultured. Here we reanalyze a portion of the data in that paper, and …

[HTML][HTML] An antibiotic from an uncultured bacterium binds to an immutable target

R Shukla, AJ Peoples, KC Ludwig, S Maity, MGN Derks… - Cell, 2023 - cell.com
Antimicrobial resistance is a leading mortality factor worldwide. Here, we report the
discovery of clovibactin, an antibiotic isolated from uncultured soil bacteria. Clovibactin …

Principles of seed banks and the emergence of complexity from dormancy

JT Lennon, F den Hollander… - Nature …, 2021 - nature.com
Across the tree of life, populations have evolved the capacity to contend with suboptimal
conditions by engaging in dormancy, whereby individuals enter a reversible state of reduced …

Bacterial heterogeneity and antibiotic survival: understanding and combatting persistence and heteroresistance

L Dewachter, M Fauvart, J Michiels - Molecular cell, 2019 - cell.com
For decades, mankind has dominated the battle against bacteria, yet the tide is slowly
turning. Our antibacterial strategies are becoming less effective, allowing bacteria to get the …

Present and future of culturing bacteria

J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …

Environmental reservoirs and mechanisms of persistence of Vibrio cholerae

C Lutz, M Erken, P Noorian, S Sun… - Frontiers in …, 2013 - frontiersin.org
It is now well accepted that Vibrio cholerae, the causative agent of the water-borne disease
cholera, is acquired from environmental sources where it persists between outbreaks of the …

General mechanisms leading to persister formation and awakening

D Wilmaerts, EM Windels, N Verstraeten, J Michiels - Trends in Genetics, 2019 - cell.com
All bacterial populations harbor a small fraction of transiently antibiotic-tolerant cells called
persisters. These phenotypic variants compromise successful antibiotic treatment because …

The phenomenon of microbial uncultivability

SS Epstein - Current opinion in microbiology, 2013 - Elsevier
Highlights•Most of microbial diversity on the planet remains unexplored.•Accessing this
diversity is critical for basic microbiology and pharmaceutical discovery.•Innovations in …