Biosynthesis and regulation of phenylpropanoids in plants

Y Deng, S Lu - Critical reviews in plant sciences, 2017 - Taylor & Francis
Phenylpropanoids are a large class of plant secondary metabolites derived from aromatic
amino acids phenylalanine in most plants or tyrosine in partial monocots. It mainly includes …

Revisiting criteria for plant microRNA annotation in the era of big data

MJ Axtell, BC Meyers - The Plant Cell, 2018 - academic.oup.com
Abstract MicroRNAs (miRNAs) are∼ 21-nucleotide-long regulatory RNAs that arise from
endonucleolytic processing of hairpin precursors. Many function as essential …

miRBase: from microRNA sequences to function

A Kozomara, M Birgaoanu… - Nucleic acids …, 2019 - academic.oup.com
Abstract miRBase catalogs, names and distributes microRNA gene sequences. The latest
release of miRBase (v22) contains microRNA sequences from 271 organisms: 38 589 …

MirGeneDB 2.1: toward a complete sampling of all major animal phyla

B Fromm, E Høye, D Domanska, X Zhong… - Nucleic acids …, 2022 - academic.oup.com
We describe an update of MirGeneDB, the manually curated microRNA gene database.
Adhering to uniform and consistent criteria for microRNA annotation and nomenclature, we …

MicroRNAs in crop improvement: fine-tuners for complex traits

J Tang, C Chu - Nature plants, 2017 - nature.com
One of the most common challenges for both conventional and modern crop improvement is
that the appearance of one desirable trait in a new crop variety is always balanced by the …

A uniform system for the annotation of vertebrate microRNA genes and the evolution of the human microRNAome

B Fromm, T Billipp, LE Peck, M Johansen… - Annual review of …, 2015 - annualreviews.org
Although microRNAs (miRNAs) are among the most intensively studied molecules of the
past 20 years, determining what is and what is not a miRNA has not been straightforward …

MirGeneDB 2.0: the metazoan microRNA complement

B Fromm, D Domanska, E Høye… - Nucleic Acids …, 2020 - academic.oup.com
Small non-coding RNAs have gained substantial attention due to their roles in animal
development and human disorders. Among them, microRNAs are special because …

PmiREN: a comprehensive encyclopedia of plant miRNAs

Z Guo, Z Kuang, Y Wang, Y Zhao, Y Tao… - Nucleic acids …, 2020 - academic.oup.com
MicroRNAs (miRNAs) are small non-coding RNA molecules that function as diverse
endogenous gene regulators at the post-transcriptional level. In the past two decades, as …

Improved placement of multi-mapping small RNAs

NR Johnson, JM Yeoh, C Coruh… - G3: Genes, Genomes …, 2016 - academic.oup.com
High-throughput sequencing of small RNAs (sRNA-seq) is a popular method used to
discover and annotate microRNAs (miRNAs), endogenous short interfering RNAs (siRNAs) …

Plant miRNAs: biogenesis, organization and origins

H Budak, BA Akpinar - Functional & integrative genomics, 2015 - Springer
MicroRNAs, or miRNAs, are posttranscriptional regulators of gene expression. A wealth of
observations and findings suggest highly complex, multicomponent, and intermingled …