Small non-coding RNAs derived from eukaryotic ribosomal RNA

M Lambert, A Benmoussa, P Provost - Non-coding RNA, 2019 - mdpi.com
The advent of RNA-sequencing (RNA-Seq) technologies has markedly improved our
knowledge and expanded the compendium of small non-coding RNAs, most of which derive …

Angiogenin generates specific stress-induced tRNA halves and is not involved in tRF-3–mediated gene silencing

Z Su, C Kuscu, A Malik, E Shibata, A Dutta - Journal of Biological Chemistry, 2019 - ASBMB
tRNA fragments (tRFs) and tRNA halves have been implicated in various cellular processes,
including gene silencing, translation, stress granule assembly, cell differentiation …

Plant RNases T2, but not Dicer-like proteins, are major players of tRNA-derived fragments biogenesis

C Megel, G Hummel, S Lalande, E Ubrig… - Nucleic Acids …, 2019 - academic.oup.com
RNA fragments deriving from tRNAs (tRFs) exist in all branches of life and the repertoire of
their biological functions regularly increases. Paradoxically, their biogenesis remains …

tRNA‐derived fragments as new players in regulatory processes in yeast

A Tyczewska, K Grzywacz - Yeast, 2023 - Wiley Online Library
For a very long time, RNA molecules were treated as transistory molecules, by which the
genetic information flows from DNA to proteins; the model proposed in the 1960s accepted …

Isolation and initial structure-functional characterization of endogenous tRNA-derived stress-induced RNAs

Y Akiyama, P Kharel, T Abe, P Anderson, P Ivanov - RNA biology, 2020 - Taylor & Francis
Recent transcriptome-wide studies have identified a diverse pool of transfer RNA (tRNA)-
derived RNAs or tRNA-derived fragments (tRFs). Some of these RNAs have been …

[HTML][HTML] Transfer RNA-derived fragments target and regulate ribosome-associated aminoacyl-transfer RNA synthetases

AM Mleczko, P Celichowski… - Biochimica et Biophysica …, 2018 - Elsevier
Ribosome-associated noncoding (ranc) RNAs are a novel class of short regulatory RNAs
with functions and origins that have not been well studied. In this present study, we …

tRFTar: prediction of tRF-target gene interactions via systemic re-analysis of Argonaute CLIP-seq datasets

Y Zhou, H Peng, Q Cui, Y Zhou - Methods, 2021 - Elsevier
Abstract tRNA-derived fragments (tRFs), which by definition are cleaved from tRNAs,
comprise a novel class of regulatory small non-coding RNAs. Recent evidence has revealed …

tRNA-derived fragments and microRNAs in the maternal-fetal interface of a mouse maternal-immune-activation autism model

Z Su, EL Frost, CR Lammert, RK Przanowska… - RNA biology, 2020 - Taylor & Francis
ABSTRACT tRNA-derived small fragments (tRFs) and tRNA halves have emerging functions
in different biological pathways, such as regulating gene expression, protein translation …

tRNA-derived short RNAs bind to Saccharomyces cerevisiae ribosomes in a stress-dependent manner and inhibit protein synthesis in vitro

K Bąkowska-Żywicka, M Kasprzyk… - FEMS Yeast …, 2016 - academic.oup.com
Recently, a number of ribosome-associated non-coding RNAs (rancRNAs) have been
discovered in all three domains of life. In our previous studies, we have described several …

The ribosome as a missing link in prebiotic evolution III: over-representation of tRNA-and rRNA-like sequences and plieofunctionality of ribosome-related molecules …

R Root-Bernstein, M Root-Bernstein - International Journal of Molecular …, 2019 - mdpi.com
We propose that ribosomal RNA (rRNA) formed the basis of the first cellular genomes, and
provide evidence from a review of relevant literature and proteonomic tests. We have …