Enabling web-scale data integration in biomedicine through linked open data

MR Kamdar, JD Fernández, A Polleres… - NPJ digital …, 2019 - nature.com
The biomedical data landscape is fragmented with several isolated, heterogeneous data
and knowledge sources, which use varying formats, syntaxes, schemas, and entity …

Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings

R Celebi, H Uyar, E Yasar, O Gumus, O Dikenelli… - BMC …, 2019 - Springer
Background Current approaches to identifying drug-drug interactions (DDIs), include safety
studies during drug development and post-marketing surveillance after approval, offer …

[Retracted] Recent Progress in Traditional Chinese Medicines and Their Mechanism in the Treatment of Allergic Rhinitis

D Mao, Z He, L Li, Y Lei, M Xiao… - Journal of Healthcare …, 2022 - Wiley Online Library
Objective. To conduct a systematic review on the mechanism of action and use of traditional
Chinese medicines (TCM) in allergic rhinitis treatment. Background. Allergic rhinitis (AR) is a …

Data-driven prediction of adverse drug reactions induced by drug-drug interactions

R Liu, MDM AbdulHameed, K Kumar, X Yuˆ… - BMC Pharmacology and …, 2017 - Springer
Background The expanded use of multiple drugs has increased the occurrence of adverse
drug reactions (ADRs) induced by drug-drug interactions (DDIs). However, such reactions …

Improving bioinformatics software quality through incorporation of software engineering practices

A Noor - PeerJ Computer Science, 2022 - peerj.com
Background Bioinformatics software is developed for collecting, analyzing, integrating, and
interpreting life science datasets that are often enormous. Bioinformatics engineers often …

An integrated decision support system for heart failure prediction based on feature transformation using grid of stacked autoencoders

A Noor, L Ali, HT Rauf, U Tariq, S Aslam - Measurement, 2022 - Elsevier
Heart failure (HF) is a life-threatening disease. Therefore, prediction of risks associated with
HF is essential at the early stages of the disease in order to ensure safety and reduce the …

[Retracted] A Data‐Driven Medical Decision Framework for Associating Adverse Drug Events with Drug‐Drug Interaction Mechanisms

A Noor - Journal of Healthcare Engineering, 2022 - Wiley Online Library
Adverse drug events (ADEs) occur when multiple drugs interact within an individual, thus
causing effects that were not initially predicted. Such toxic interactions lead to morbidity and …

[HTML][HTML] Identifying common methods used by drug interaction experts for finding evidence about potential drug-drug interactions: web-based survey

AJ Grizzle, J Horn, C Collins, J Schneider… - Journal of medical …, 2019 - jmir.org
Background Preventing drug interactions is an important goal to maximize patient benefit
from medications. Summarizing potential drug-drug interactions (PDDIs) for clinical decision …

Enhancing clinical data and clinical research data with biomedical ontologies-insights from the knowledge representation perspective

JP Bona, FW Prior, MN Zozus… - Yearbook of medical …, 2019 - thieme-connect.com
Objectives: There exists a communication gap between the biomedical informatics
community on one side and the computer science/artificial intelligence community on the …

Computational advances in drug safety: systematic and mapping review of knowledge engineering based approaches

P Natsiavas, A Malousi, C Bousquet… - Frontiers in …, 2019 - frontiersin.org
Drug Safety (DS) is a domain with significant public health and social impact. Knowledge
Engineering (KE) is the Computer Science discipline elaborating on methods and tools for …