A survey of the year 2002 commercial optical biosensor literature

RL Rich, DG Myszka - Journal of Molecular Recognition, 2003 - Wiley Online Library
We have compiled 819 articles published in the year 2002 that involved commercial optical
biosensor technology. The literature demonstrates that the technology's application …

Improved GROMOS 54A7 charge sets for phosphorylated Tyr, Ser, and Thr to deal with pH-dependent binding phenomena

NFB Oliveira, IDS Pires… - Journal of Chemical …, 2020 - ACS Publications
Phosphorylation is a ubiquitous post-translational modification in proteins, and the
phosphate group is present constitutively or transiently in most biological building blocks …

Protonation States in molecular dynamics simulations of peptide folding and binding

A Ben-Shimon, DE Shalev… - Current pharmaceutical …, 2013 - ingentaconnect.com
Peptides are important signaling modules, acting both as individual hormones and as parts
of larger molecules, mediating their protein-protein interactions. Many peptidic and …

Kinetic and thermodynamic analysis of ligand–receptor interactions: SPR applications in drug development

NJ de Mol, MJE Fischer - 2008 - books.rsc.org
Increasing evidence can be found that describing receptor ligand interactions in terms of a
''lock-and-key''model is no longer adequate. Receptors can be regarded as part of a …

Surface plasmon resonance thermodynamic and kinetic analysis as a strategic tool in drug design. Distinct ways for phosphopeptides to plug into Src-and Grb2 SH2 …

NJ de Mol, FJ Dekker, I Broutin… - Journal of medicinal …, 2005 - ACS Publications
Thermodynamic and kinetic studies of biomolecular interactions give insight into specificity
of molecular recognition processes and advance rational drug design. Binding of …

Site-specific peptide and protein immobilization on surface plasmon resonance chips via strain-promoted cycloaddition

AEM Wammes, MJE Fischer, NJ de Mol, MB van Eldijk… - Lab on a Chip, 2013 - pubs.rsc.org
Surface plasmon resonance (SPR) is a powerful label-free diagnostic tool to study
biomolecular interactions. However, one of the drawbacks of SPR is the lack of controlled …

Switching between low and high affinity for the Syk tandem SH2 domain by irradiation of azobenzene containing ITAM peptidomimetics

J Kuil, LTM van Wandelen, NJ de Mol… - Journal of peptide …, 2009 - Wiley Online Library
Spleen tyrosine kinase (Syk) plays an essential role in IgE receptor signaling (FcεRI), which
leads to mast cell degranulation. Divalent binding of the tandem SH2 domain (tSH2) of Syk …

Protein flexibility and ligand rigidity: a thermodynamic and kinetic study of ITAM‐based ligand binding to Syk tandem SH2

NJ de Mol, MI Catalina, FJ Dekker, MJE Fischer… - …, 2005 - Wiley Online Library
Abstract The Syk tandem Src homology 2 domain (Syk tSH2) constitutes a flexible protein
module involved in the regulation of Syk kinase activity. The Syk tSH2 domain is assumed to …

A photoswitchable ITAM peptidomimetic: Synthesis and real time surface plasmon resonance (SPR) analysis of the effects of cis–trans isomerization on binding

J Kuil, LTM van Wandelen, NJ de Mol… - Bioorganic & medicinal …, 2008 - Elsevier
The Syk protein plays an important role in immune receptor signaling. The Syk tandem SH2
domain (tSH2)–ITAM interaction is important for recruiting Syk to the receptor complex and …

Evaluation of the interaction between phosphohistidine analogues and phosphotyrosine binding domains

TE McAllister, KA Horner, ME Webb - ChemBioChem, 2014 - Wiley Online Library
We have investigated the interaction of peptides containing phosphohistidine analogues
and their homologues with the prototypical phosphotyrosine binding SH2 domain from the …