Phytoplasma taxonomy: nomenclature, classification, and identification
W Wei, Y Zhao - Biology, 2022 - mdpi.com
Simple Summary Phytoplasmas are vector-borne and graft-transmissible bacteria that cause
various plant diseases, leading to severe economic losses. Since phytoplasmas cannot be …
various plant diseases, leading to severe economic losses. Since phytoplasmas cannot be …
Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus …
PN Green, JK Ardley - International journal of systematic …, 2018 - microbiologyresearch.org
The genus Methylobacterium, when first proposed by Patt et al. in 1976, was a monospecific
genus created to accommodate a single pink pigmented facultatively methylotrophic …
genus created to accommodate a single pink pigmented facultatively methylotrophic …
The IMG/M data management and analysis system v. 7: content updates and new features
IMA Chen, K Chu, K Palaniappan, A Ratner… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img. jgi.
doe. gov/m/) at the Department of Energy (DOE) Joint Genome Institute (JGI) continues to …
doe. gov/m/) at the Department of Energy (DOE) Joint Genome Institute (JGI) continues to …
A genomic catalog of Earth's microbiomes
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has
enabled insights into the ecology and evolution of environmental and host-associated …
enabled insights into the ecology and evolution of environmental and host-associated …
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities
IMA Chen, K Chu, K Palaniappan, A Ratner… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img. jgi.
doe. gov/m/) contains annotated isolate genome and metagenome datasets sequenced at …
doe. gov/m/) contains annotated isolate genome and metagenome datasets sequenced at …
A complete domain-to-species taxonomy for Bacteria and Archaea
Abstract The Genome Taxonomy Database is a phylogenetically consistent, genome-based
taxonomy that provides rank-normalized classifications for~ 150,000 bacterial and archaeal …
taxonomy that provides rank-normalized classifications for~ 150,000 bacterial and archaeal …
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
JP Meier-Kolthoff, M Göker - Nature communications, 2019 - nature.com
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
A new genomic blueprint of the human gut microbiota
The composition of the human gut microbiota is linked to health and disease, but knowledge
of individual microbial species is needed to decipher their biological roles. Despite …
of individual microbial species is needed to decipher their biological roles. Despite …
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids
S Redondo-Salvo, R Fernández-López, R Ruiz… - Nature …, 2020 - nature.com
Plasmids can mediate horizontal gene transfer of antibiotic resistance, virulence genes, and
other adaptive factors across bacterial populations. Here, we analyze genomic composition …
other adaptive factors across bacterial populations. Here, we analyze genomic composition …
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
IMA Chen, K Chu, K Palaniappan, M Pillay… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Integrated Microbial Genomes & Microbiomes system v. 5.0 (IMG/M: https://img.
jgi. doe. gov/m/) contains annotated datasets categorized into: archaea, bacteria, eukarya …
jgi. doe. gov/m/) contains annotated datasets categorized into: archaea, bacteria, eukarya …