Intrinsically disordered proteins and their environment: effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and …

VN Uversky - The protein journal, 2009 - Springer
Intrinsically disordered proteins (IDPs) differ from “normal” ordered proteins at several levels,
structural, functional and conformational. Amino acid biases characteristic for IDPs …

Assessing protein disorder and induced folding

V Receveur‐Bréchot, JM Bourhis… - Proteins: Structure …, 2006 - Wiley Online Library
Intrinsically disordered proteins (IDPs) defy the structure–function paradigm as they fulfill
essential biological functions while lacking well‐defined secondary and tertiary structures …

The molecular mechanism of stabilization of proteins by TMAO and its ability to counteract the effects of urea

Q Zou, BJ Bennion, V Daggett… - Journal of the American …, 2002 - ACS Publications
Trimethylamine n-oxide (TMAO) is a naturally occurring osmolyte that stabilizes proteins and
offsets the destabilizing effects of urea. To investigate the molecular mechanism of these …

Counteraction of urea-induced protein denaturation by trimethylamine N-oxide: A chemical chaperone at atomic resolution

BJ Bennion, V Daggett - Proceedings of the National …, 2004 - National Acad Sciences
Proteins are very sensitive to their solvent environments. Urea is a common chemical
denaturant of proteins, yet some animals contain high concentrations of urea. These animals …

Roles of osmolytes in protein folding and aggregation in cells and their biotechnological applications

G Rabbani, I Choi - International journal of biological macromolecules, 2018 - Elsevier
Nature has selected osmolytes to protect intracellular macromolecules exposed to
denaturing conditions and stabilize proteins. Osmolytes are small naturally occurring …

Gene regulation by the glucocorticoid receptor: structure: function relationship

R Kumar, EB Thompson - The Journal of steroid biochemistry and …, 2005 - Elsevier
The glucocorticoid receptor (GR) belongs to the superfamily of ligand-activated transcription
factors, the nuclear hormone receptors. Like other members of the family, the GR possesses …

Effect of additives on protein aggregation

H Hamada, T Arakawa, K Shiraki - Current pharmaceutical …, 2009 - ingentaconnect.com
This paper overviews solution additives that affect protein stability and aggregation during
refolding, heating, and freezing processes. Solution additives are mainly grouped into two …

Transactivation functions of the N-terminal domains of nuclear hormone receptors: protein folding and coactivator interactions

RAJ Kumar, EB Thompson - Molecular endocrinology, 2003 - academic.oup.com
The N-terminal domains (NTDs) of many members of the nuclear hormone receptor (NHR)
family contain potent transcription-activating functions (AFs). Knowledge of the mechanisms …

Biochemical effects of molecular crowding

NA Chebotareva, BI Kurganov, NB Livanova - Biochemistry (Moscow), 2004 - Springer
Cell cytoplasm contains high concentrations of high-molecular-weight components that
occupy a substantial part of the volume of the medium (crowding conditions). The effect of …

In situ analysis of osmolyte mechanisms of proteome thermal stabilization

M Pepelnjak, B Velten, N Näpflin, T von Rosen… - Nature Chemical …, 2024 - nature.com
Organisms use organic molecules called osmolytes to adapt to environmental conditions. In
vitro studies indicate that osmolytes thermally stabilize proteins, but mechanisms are …