How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies
It is now possible to assemble near-perfect bacterial genomes using Oxford Nanopore
Technologies (ONT) long reads, but short-read polishing is usually required for perfection …
Technologies (ONT) long reads, but short-read polishing is usually required for perfection …
Complementary insights into gut viral genomes: a comparative benchmark of short-and long-read metagenomes using diverse assemblers and binners
Background Metagenome-assembled viral genomes have significantly advanced the
discovery and characterization of the human gut virome. However, we lack a comparative …
discovery and characterization of the human gut virome. However, we lack a comparative …
Insights Into Phylogeny, Diversity and Functional Potential of Poseidoniales Viruses
Viruses infecting archaea play significant ecological roles in marine ecosystems through
host infection and lysis, yet they have remained an underexplored component of the …
host infection and lysis, yet they have remained an underexplored component of the …
[PDF][PDF] Assessing Bias and Reproducibility of Viral Metagenomics Methods for the Combined Detection of Faecal RNA and DNA Viruses
Whole transcriptome amplification (WTA2) and sequence-independent single primer
amplification (SISPA) are two widely used methods for combined metagenomic sequencing …
amplification (SISPA) are two widely used methods for combined metagenomic sequencing …
Missing the forest for the trees: time to address stool microbial load and everything else that realistically matters in microbiome studies
TT Oommen, R Ahamed… - Journal of Hepatology, 2024 - journal-of-hepatology.eu
The role of oral (represented by salivary microbiota), skin, gastrointestinal mucosal, and
stool microbiota in cirrhosis and their associations with disease severity and portal …
stool microbiota in cirrhosis and their associations with disease severity and portal …
Limited consensus of marine viral diversity observed across techniques
M Martinez-Garcia, F Martinez-Hernandez, ML Gomez… - 2024 - researchsquare.com
Viruses are fundamental to many aspects of life influencing ecosystem functions. Thelenses
we use for exploring the viral diversity have expanded, yet at the same time each has …
we use for exploring the viral diversity have expanded, yet at the same time each has …
Bioinformatic approaches for the prediction of seafloor ecological state from Nanopore 16SrRNA gene data
M Philip - 2024 - nmbu.brage.unit.no
The increasing anthropogenic pressures, particularly from industries and activities like
intensive aquaculture affect marine benthic ecosystems. This context requires immediate …
intensive aquaculture affect marine benthic ecosystems. This context requires immediate …