Determinants of genetic diversity

H Ellegren, N Galtier - Nature Reviews Genetics, 2016 - nature.com
Genetic polymorphism varies among species and within genomes, and has important
implications for the evolution and conservation of species. The determinants of this variation …

Harnessing genomic information for livestock improvement

M Georges, C Charlier, B Hayes - Nature Reviews Genetics, 2019 - nature.com
The world demand for animal-based food products is anticipated to increase by 70% by
2050. Meeting this demand in a way that has a minimal impact on the environment will …

[HTML][HTML] Whole-genome resequencing reveals loci under selection during chicken domestication

CJ Rubin, MC Zody, J Eriksson, JRS Meadows… - Nature, 2010 - nature.com
Domestic animals are excellent models for genetic studies of phenotypic evolution,,. They
have evolved genetic adaptations to a new environment, the farm, and have been subjected …

[HTML][HTML] A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

SD Schoville, YH Chen, MN Andersson, JB Benoit… - Scientific reports, 2018 - nature.com
The Colorado potato beetle is one of the most challenging agricultural pests to manage. It
has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable …

Genetic diversity in farm animals–a review

LF Groeneveld, JA Lenstra, H Eding, MA Toro… - Animal …, 2010 - Wiley Online Library
Domestication of livestock species and a long history of migrations, selection and adaptation
have created an enormous variety of breeds. Conservation of these genetic resources relies …

Avian colibacillosis: still many black holes

R Guabiraba, C Schouler - FEMS microbiology letters, 2015 - academic.oup.com
Avian pathogenic Escherichia coli (APEC) strains cause severe respiratory and systemic
diseases, threatening food security and avian welfare worldwide. Intensification of poultry …

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Project management: Fulton Lucinda A. 1 Mardis … - Nature, 2004 - nature.com
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the
chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to …

Predicting the effects of amino acid substitutions on protein function

PC Ng, S Henikoff - Annu. Rev. Genomics Hum. Genet., 2006 - annualreviews.org
Nonsynonymous single nucleotide polymorphisms (nsSNPs) are coding variants that
introduce amino acid changes in their corresponding proteins. Because nsSNPs can affect …

[HTML][HTML] Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology

AM Ramos, RPMA Crooijmans, NA Affara, AJ Amaral… - PloS one, 2009 - journals.plos.org
Background The dissection of complex traits of economic importance to the pig industry
requires the availability of a significant number of genetic markers, such as single nucleotide …

[HTML][HTML] Development of a high density 600K SNP genotyping array for chicken

A Kranis, AA Gheyas, C Boschiero, F Turner, L Yu… - BMC genomics, 2013 - Springer
Abstract Background High density (HD) SNP genotyping arrays are an important tool for
genetic analyses of animals and plants. Although the chicken is one of the most important …