Fundamental photophysics of isomorphic and expanded fluorescent nucleoside analogues

D Dziuba, P Didier, S Ciaco, A Barth… - Chemical Society …, 2021 - pubs.rsc.org
Fluorescent nucleoside analogues (FNAs) are structurally diverse mimics of the natural
essentially non-fluorescent nucleosides which have found numerous applications in probing …

Probing of nucleic acid structures, dynamics, and interactions with environment-sensitive fluorescent labels

BY Michel, D Dziuba, R Benhida… - Frontiers in …, 2020 - frontiersin.org
Fluorescence labeling and probing are fundamental techniques for nucleic acid analysis
and quantification. However, new fluorescent probes and approaches are urgently needed …

Human Telomeric DNA Forms Parallel-Stranded Intramolecular G-Quadruplex in K+ Solution under Molecular Crowding Condition

Y Xue, Z Kan, Q Wang, Y Yao, J Liu… - Journal of the …, 2007 - ACS Publications
The G-rich strand of human telomeric DNA can fold into a four-stranded structure called G-
quadruplex and inhibit telomerase activity that is expressed in 85− 90% tumor cells. For this …

2-aminopurine as a fluorescent probe of DNA conformation and the DNA–enzyme interface

AC Jones, RK Neely - Quarterly reviews of biophysics, 2015 - cambridge.org
Nearly 50 years since its potential as a fluorescent base analogue was first recognized, 2-
aminopurine (2AP) continues to be the most widely used fluorescent probe of DNA structure …

[图书][B] DNA and RNA modification enzymes: structure, mechanism, function and evolution

H Grosjean - 2009 - taylorfrancis.com
This volume is a timely and comprehensive description of the many facets of DNA and RNA
modification-editing processes and to some extent repair mechanisms. Each chapter offers …

Fluorescent DNA-based enzyme sensors

N Dai, ET Kool - Chemical Society Reviews, 2011 - pubs.rsc.org
Fluorescent sensors that make use of DNA structures have become widely useful in
monitoring enzymatic activities. Early studies focused primarily on enzymes that naturally …

Characterization and use of an unprecedentedly bright and structurally non-perturbing fluorescent DNA base analogue

P Sandin, K Börjesson, H Li, J Mårtensson… - Nucleic acids …, 2008 - academic.oup.com
This article presents the first evidence that the DNA base analogue 1, 3-diaza-2-
oxophenoxazine, tC O, is highly fluorescent, both as free nucleoside and incorporated in an …

Switching on the fluorescence of 2-aminopurine by site-selective microhydration

S Lobsiger, S Blaser, RK Sinha, HM Frey… - Nature chemistry, 2014 - nature.com
Aminopurine (2AP) is a fluorescent isomer of adenine and has a fluorescence lifetime of~ 11
ns in water. It is widely used in biochemical settings as a site-specific fluorescent probe of …

Conquering 2-aminopurine's deficiencies: highly emissive isomorphic guanosine surrogate faithfully monitors guanosine conformation and dynamics in DNA

M Sholokh, R Sharma, D Shin, R Das… - Journal of the …, 2015 - ACS Publications
The archetypical fluorescent nucleoside analog, 2-aminopurine (2Ap), has been used in
countless assays, though it suffers from very low quantum yield, especially when included in …

Environmentally sensitive fluorescent nucleoside analogues as probes for nucleic acid–protein interactions: molecular design and biosensing applications

D Dziuba - Methods and Applications in Fluorescence, 2022 - iopscience.iop.org
Fluorescent nucleoside analogues (FNAs) are indispensable in studying the interactions of
nucleic acids with nucleic acid-binding proteins. By replacing one of the poorly emissive …