String covering: A survey

N Mhaskar, WF Smyth - Fundamenta Informaticae, 2023 - fi.episciences.org
The study of strings is an important combinatorial field that precedes the digital computer.
Strings can be very long, trillions of letters, so it is important to find compact representations …

[HTML][HTML] Covering problems for partial words and for indeterminate strings

M Crochemore, CS Iliopoulos, T Kociumaka… - Theoretical Computer …, 2017 - Elsevier
Indeterminate strings are a subclass of non-standard words having non-deterministic nature.
In a classic string every position contains exactly one symbol—we say it is a solid symbol …

[HTML][HTML] Period recovery of strings over the Hamming and edit distances

A Amir, M Amit, GM Landau, D Sokol - Theoretical Computer Science, 2018 - Elsevier
A string T of length m is periodic in P of length p if P is a substring of T and T [i]= T [i+ p] for all
0≤ i≤ m− p− 1 and m≥ 2 p. The shortest such prefix, P, is called the period of T (ie, P= T …

[HTML][HTML] Computing covers using prefix tables

A Alatabbi, MS Rahman, WF Smyth - Discrete Applied Mathematics, 2016 - Elsevier
An indeterminate string x= x [1.. n] on an alphabet Σ is a sequence of nonempty subsets of Σ;
x is said to be regular if every subset is of size one. A proper substring u of regular x is said …

Enhanced covers of regular & indeterminate strings using prefix tables

A Alatabbi, AS Islam, MS Rahman, J Simpson… - arXiv preprint arXiv …, 2015 - arxiv.org
A\itbf {cover} of a string $ x= x [1.. n] $ is a proper substring $ u $ of $ x $ such that $ x $ can
be constructed from possibly overlapping instances of $ u $. A recent paper\cite …

Covering problems for partial words and for indeterminate strings

M Crochemore, CS Iliopoulos, T Kociumaka… - … on Algorithms and …, 2014 - Springer
We consider the problem of computing a solid cover of an indeterminate string. An
indeterminate string may contain non-solid symbols, each of which specifies a subset of the …

[HTML][HTML] Indeterminate string inference algorithms

S Nazeen, MS Rahman, R Reaz - Journal of Discrete Algorithms, 2012 - Elsevier
Regularities in indeterminate strings have recently been a matter of interest because of their
use in the fields of molecular biology, musical text analysis, cryptanalysis and so on. In this …

[PDF][PDF] Advances in stringology and applications

A Alatabbi - 2014 - kclpure.kcl.ac.uk
Written text is considered as one of the oldest methods to represent knowledge. A text can
be defined as a logical and consistent sequence of symbols which encodes information in a …

[PDF][PDF] Degenerate String Reconstruction from Cover Arrays.

DR Baisya, MM Faysal, MS Rahman - Stringology, 2013 - stringology.org
Regularities in degenerate strings have recently been a matter of interest because of their
use in the fields of molecular biology, musical text analysis, cryptanalysis and so on. In this …

A new approach to regular & indeterminate strings

FA Louza, N Mhaskar, WF Smyth - Theoretical Computer Science, 2021 - Elsevier
In this paper we propose a new, more appropriate definition of regular and indeterminate
strings. A regular string is one that is “isomorphic” to a string whose entries all consist of a …