[PDF][PDF] Protein-DNA recognition

RT Sauer, CO Pabo - Annu Rev Biochem, 1984 - nsm.buffalo.edu
Sequence-specific DNA-binding proteins regulate gene expression and also serve structural
and catalytic roles in other cellular processes. How do these proteins bind to double-helical …

Use of gel retardation to analyze protein-nucleic acid interactions

D Lane, P Prentki, M Chandler - Microbiological reviews, 1992 - Am Soc Microbiol
Protein-nucleic acid interactions are crucial in the regulation of many fundamental cellular
processes. The nature of these interactions is susceptible to analysis by a variety of …

Electrophoretic mobility shift assay (EMSA) for detecting protein–nucleic acid interactions

LM Hellman, MG Fried - Nature protocols, 2007 - nature.com
The gel electrophoresis mobility shift assay (EMSA) is used to detect protein complexes with
nucleic acids. It is the core technology underlying a wide range of qualitative and …

A Pro12Ala substitution in PPARγ2 associated with decreased receptor activity, lower body mass index and improved insulin sensitivity

SS Deeb, L Fajas, M Nemoto, J Pihlajamäki… - Nature …, 1998 - nature.com
The peroxisome proliferator-activated receptor-γ (PPARγ) is a transcription factor that has a
pivotal role in adipocyte differentiation and expression of adipocyte-specific genes 1, 3. The …

The organization, promoter analysis, and expression of the human PPARγ gene

L Fajas, D Auboeuf, E Raspé, K Schoonjans… - Journal of Biological …, 1997 - ASBMB
PPARγ is a member of the PPAR subfamily of nuclear receptors. In this work, the structure of
the human PPARγ cDNA and gene was determined, and its promoters and tissue-specific …

PPARalpha and PPARgamma activators direct a distinct tissue‐specific transcriptional response via a PPRE in the lipoprotein lipase gene.

K Schoonjans, J Peinado‐Onsurbe, AM Lefebvre… - The EMBO …, 1996 - embopress.org
Increased activity of lipoprotein lipase (LPL) may explain the hypotriglyceridemic effects of
fibrates, thiazolidinediones and fatty acids, which are known activators (and/or ligands) of …

Cholera toxin transcriptional activator ToxR is a transmembrane DNA binding protein

VL Miller, RK Taylor, JJ Mekalanos - cell, 1987 - cell.com
The toxR gene encodes a transcriptional activator controlling cholera toxin, pllus, and outer-
membrane protein expression in V cholerae. Nucleotide sequence and mutational analysis …

Regulation of peroxisome proliferator-activated receptor γ expression by adipocyte differentiation and determination factor 1/sterol regulatory element binding protein …

L Fajas, K Schoonjans, L Gelman, JB Kim… - … and cellular biology, 1999 - Am Soc Microbiol
Peroxisome proliferator-activated receptor γ (PPARγ) is a nuclear receptor implicated in
adipocyte differentiation and insulin sensitivity. We investigated whether PPARγ expression …

Structure of plectonemically supercoiled DNA

TC Boles, JH White, NR Cozzarelli - Journal of molecular biology, 1990 - Elsevier
Using electron microscopy and topological methods, we have deduced an average structure
for negatively supercoiled circular DNA in solution. Our data suggest that DNA has a …

The locus of sequence-directed and protein-induced DNA bending

HM Wu, DM Crothers - Nature, 1984 - nature.com
The bending locus of trypanosome kinetoplast DNA, identified by gel electrophoresis, has
tracts of a simple repeat sequence (CA5–6 T) symmetrically distributed about it, with a …