Unravelling microbial communities with DNA-microarrays: challenges and future directions

M Wagner, H Smidt, A Loy, J Zhou - Microbial ecology, 2007 - Springer
High-throughput technologies are urgently needed for monitoring the formidable biodiversity
and functional capabilities of microorganisms in the environment. Ten years ago, DNA …

iTRAQ underestimation in simple and complex mixtures:“the good, the bad and the ugly”

SY Ow, M Salim, J Noirel, C Evans… - Journal of proteome …, 2009 - ACS Publications
The increasing popularity of iTRAQ for quantitative proteomics applications makes it
necessary to evaluate its relevance, accuracy, and precision for biological interpretation …

Introduction to microarray technology

M Dufva - DNA Microarrays for Biomedical Research: Methods …, 2009 - Springer
DNA microarrays can be used for large number of application where high-throughput is
needed. The ability to probe a sample for hundred to million different molecules at once has …

Tracking single molecules in the live cell plasma membrane—Do's and Don't's

S Wieser, GJ Schütz - Methods, 2008 - Elsevier
In recent years, the development of fast and highly sensitive microscopy has changed the
way of thinking of cell biologists: it became more and more important to study the structural …

Digital ELISA for the quantification of attomolar concentrations of Alzheimer's disease biomarker protein Tau in biological samples

E Pérez-Ruiz, D Decrop, K Ven, L Tripodi, K Leirs… - Analytica chimica …, 2018 - Elsevier
The close correlation between Tau pathology and Alzheimer's disease (AD) progression
makes this protein a suitable biomarker for diagnosis and monitoring of the disorder …

Broadband fluorescence enhancement with self-assembled silver nanoparticle optical antennas

C Vietz, I Kaminska, M Sanz Paz, P Tinnefeld… - ACS …, 2017 - ACS Publications
Plasmonic structures are known to affect the fluorescence properties of dyes placed in close
proximity. This effect has been exploited in combination with single-molecule techniques for …

Digital microarrays: Single-molecule readout with interferometric detection of plasmonic nanorod labels

D Sevenler, GG Daaboul, F Ekiz Kanik, NL Unlu… - ACS …, 2018 - ACS Publications
DNA and protein microarrays are a high-throughput technology that allow the simultaneous
quantification of tens of thousands of different biomolecular species. The mediocre …

Analysis of DNA–protein interactions: from nitrocellulose filter binding assays to microarray studies

R Helwa, JD Hoheisel - Analytical and bioanalytical chemistry, 2010 - Springer
Determination of the sequence of the human genome and knowledge of the genetic code
have allowed rapid progress in the identification of mammalian proteins. However, far less is …

Proteomic profiling of Pseudomonas aeruginosa AES-1R, PAO1 and PA14 reveals potential virulence determinants associated with a transmissible cystic fibrosis …

NJ Hare, N Solis, C Harmer, NB Marzook, B Rose… - BMC microbiology, 2012 - Springer
Background Pseudomonas aeruginosa is an opportunistic pathogen that is the major cause
of morbidity and mortality in patients with cystic fibrosis (CF). While most CF patients are …

Quantitative study of the effect of coverage on the hybridization efficiency of surface-bound DNA nanostructures

E Mirmomtaz, M Castronovo, C Grunwald, F Bano… - Nano …, 2008 - ACS Publications
We demonstrate that, contrary to current understanding, the density of probe molecules is
not responsible for the lack of hybridization in high density single-stranded DNA (ss-DNA) …