Energetics of protein structure

GI Makhatadze, PL Privalov - Advances in protein chemistry, 1995 - Elsevier
Publisher Summary This chapter summarizes the experimental information on protein
energetics. This field is developing fast and the concept of the energetics of protein structure …

Mechanisms of cooperativity and allosteric regulation in proteins

MF Perutz - Quarterly reviews of biophysics, 1989 - cambridge.org
AUosteric proteins control and coordinate chemical events in the living cell. When Monod
conceived that idea he said that he had discovered the second secret of life. The first was …

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å

NP Pavletich, CO Pabo - Science, 1991 - science.org
The zinc finger DNA-binding motif occurs in many proteins that regulate eukaryotic gene
expression. The crystal structure of a complex containing the three zinc fingers from Zif268 …

DNA: structure and function

RR Sinden, CE Pearson, VN Potaman… - Advances in genome …, 1998 - Elsevier
Publisher Summary This chapter discusses the structure and function of DNA. DNA occupies
a critical role in cells, because it is the source of all intrinsic genetic information. Chemically …

[HTML][HTML] The AT-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure.

R Reeves, MS Nissen - Journal of Biological Chemistry, 1990 - Elsevier
We have determined the domains of the mammalian high mobility group (HMG) I
chromosomal proteins necessary and sufficient for binding to the narrow minor groove of …

Mechanisms underlying expression of Tn10 encoded tetracycline resistance

W Hillen, C Berens - Annual review of microbiology, 1994 - go.gale.com
Determinants of bacterial tetracycline resistance are located in transposons and R-factors.
They are encoded by the genes tetA and tetR and the products TetA, is tetracyline-proton …

Allostery: absence of a change in shape does not imply that allostery is not at play

CJ Tsai, A Del Sol, R Nussinov - Journal of molecular biology, 2008 - Elsevier
Allostery is essential for controlled catalysis, signal transmission, receptor trafficking, turning
genes on and off, and apoptosis. It governs the organism's response to environmental and …

Over-and under-representation of short oligonucleotides in DNA sequences.

C Burge, AM Campbell, S Karlin - Proceedings of the …, 1992 - National Acad Sciences
Strand-symmetric relative abundance functionals for di-, tri-, and tetranucleotides are
introduced and applied to sequences encompassing a broad phylogenetic range to discern …

Widespread occurrence of three sequence motifs in diverse S-adenosylmethionine-dependent methyltransferases suggests a common structure for these enzymes

RM Kagan, S Clarke - Archives of biochemistry and biophysics, 1994 - Elsevier
Three regions of sequence similarity have been reported in several protein and small-
molecule S-adenosylmethionine-dependent methyltransferases. Using multiple alignments …

Compositional biases of bacterial genomes and evolutionary implications

S Karlin, J Mrazek, AM Campbell - Journal of bacteriology, 1997 - Am Soc Microbiol
We compare and contrast genome-wide compositional biases and distributions of short
oligonucleotides across 15 diverse prokaryotes that have substantial genomic sequence …