Visualization of omics data for systems biology

N Gehlenborg, SI O'donoghue, NS Baliga… - Nature …, 2010 - nature.com
High-throughput studies of biological systems are rapidly accumulating a wealth of'omics'-
scale data. Visualization is a key aspect of both the analysis and understanding of these …

Information visualization

C Chen - Wiley Interdisciplinary Reviews: Computational …, 2010 - Wiley Online Library
This overview introduces the key structure of the field of information visualization, a number
of influential exemplars in the field, and challenging as well as promising directions of future …

Patterns of connections and movements in dual‐map overlays: A new method of publication portfolio analysis

C Chen, L Leydesdorff - Journal of the association for …, 2014 - Wiley Online Library
Portfolio analysis of the publication profile of a unit of interest, ranging from individuals and
organizations to a scientific field or interdisciplinary programs, aims to inform analysts and …

Visual analysis of large graphs: state‐of‐the‐art and future research challenges

T Von Landesberger, A Kuijper… - Computer graphics …, 2011 - Wiley Online Library
The analysis of large graphs plays a prominent role in various fields of research and is
relevant in many important application areas. Effective visual analysis of graphs requires …

Bubble sets: Revealing set relations with isocontours over existing visualizations

C Collins, G Penn, S Carpendale - IEEE transactions on …, 2009 - ieeexplore.ieee.org
While many data sets contain multiple relationships, depicting more than one data
relationship within a single visualization is challenging. We introduce Bubble Sets as a …

A survey of two-dimensional graph layout techniques for information visualisation

H Gibson, J Faith, P Vickers - Information visualization, 2013 - journals.sagepub.com
Many algorithms for graph layout have been devised over the last 30 years spanning both
the graph drawing and information visualisation communities. This article first reviews the …

Preserving minority structures in graph sampling

Y Zhao, H Jiang, Y Qin, H Xie, Y Wu… - … on Visualization and …, 2020 - ieeexplore.ieee.org
Sampling is a widely used graph reduction technique to accelerate graph computations and
simplify graph visualizations. By comprehensively analyzing the literature on graph …

[图书][B] Modeling in systems biology: the Petri net approach

I Koch, W Reisig, F Schreiber - 2010 - books.google.com
The emerging, multi-disciplinary field of systems biology is devoted to the study of the
relationships between various parts of a biological system, and computer modeling plays a …

Untangling euler diagrams

NH Riche, T Dwyer - IEEE Transactions on Visualization and …, 2010 - ieeexplore.ieee.org
In many common data analysis scenarios the data elements are logically grouped into sets.
Venn and Euler style diagrams are a common visual representation of such set membership …

[HTML][HTML] Exploring the limits of complexity: A survey of empirical studies on graph visualisation

V Yoghourdjian, D Archambault, S Diehl, T Dwyer… - Visual Informatics, 2018 - Elsevier
For decades, researchers in information visualisation and graph drawing have focused on
developing techniques for the layout and display of very large and complex networks …