[HTML][HTML] Advancing scanning probe microscopy simulations: A decade of development in probe-particle models

N Oinonen, AV Yakutovich, A Gallardo… - Computer Physics …, 2024 - Elsevier
Abstract The Probe-Particle Model combine theories designed for the simulation of scanning
probe microscopy experiments, employing non-reactive, flexible tip apices to achieve sub …

Structure and Defect Identification at Self-Assembled Islands of CO2 Using Scanning Probe Microscopy

O Custance, E Ventura-Macias, O Stetsovych… - ACS …, 2024 - ACS Publications
Understanding how carbon dioxide (CO2) behaves and interacts with surfaces is paramount
for the development of sensors and materials to attempt CO2 mitigation and catalysis. Here …

QUAM-AFM: a free database for molecular identification by atomic force microscopy

J Carracedo-Cosme, C Romero-Muñiz… - Journal of Chemical …, 2022 - ACS Publications
This paper introduces Quasar Science Resources–Autonomous University of Madrid atomic
force microscopy image data set (QUAM-AFM), the largest data set of simulated atomic force …

Molecular identification from afm images using the iupac nomenclature and attribute multimodal recurrent neural networks

J Carracedo-Cosme, C Romero-Muñiz… - … Applied Materials & …, 2023 - ACS Publications
Spectroscopic methods─ like nuclear magnetic resonance, mass spectrometry, X-ray
diffraction, and UV/visible spectroscopies─ applied to molecular ensembles have so far …

Direct Observation of Twin van der Waals Molecular Chains

S Fang, P Zahl, X Wang, P Liu… - The journal of physical …, 2023 - ACS Publications
The van der Waals (vdW) assemblies are the most common structures of materials.
However, direct mapping of intermolecular electron clouds of a vdW assembly has never …

Molecular identification with atomic force microscopy and conditional generative adversarial networks

J Carracedo-Cosme, R Pérez - npj Computational Materials, 2024 - nature.com
Frequency modulation (FM) atomic force microscopy (AFM) with metal tips functionalized
with a CO molecule at the tip apex (referred as High-Resolution AFM, HR-AFM) has …

Deprotonation-Induced Phase Transitions in the Self-Assembled Structure of Prochiral Carboxyl Derivatives

R Chen, H Song, H Zhu, X Zhou, P Li, Y Ji… - The Journal of …, 2022 - ACS Publications
Controlling the self-assembly of molecules on solid surfaces is of great importance for
creating new functional nanostructures. In this work, phase transitions in the self-assembled …

Are High Resolution Atomic Force Microscopy images proportional to the force gradient or the force maps?

E Ventura-Macias, C Romero-Muñiz… - Applied Surface …, 2023 - Elsevier
Abstract Frequency modulation Atomic Force Microscopy using tips functionalized with
carbon monoxide (also known as High Resolution AFM) shows an extraordinary resolution …

Molecular identification via molecular fingerprint extraction from atomic force microscopy images

M González Lastre, P Pou, M Wiche, D Ebeling… - Journal of …, 2024 - Springer
Abstract Non–Contact Atomic Force Microscopy with CO–functionalized metal tips (referred
to as HR-AFM) provides access to the internal structure of individual molecules adsorbed on …

Atomic force microscopy simulations for CO-functionalized tips with deep learning

J Carracedo-Cosme, P Hapala… - … Learning: Science and …, 2024 - iopscience.iop.org
Atomic force microscopy (AFM) operating in the frequency modulation mode with a metal tip
functionalized with a CO molecule is able to image the internal structure of molecules with …